View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF11888_high_25 (Length: 318)
Name: NF11888_high_25
Description: NF11888
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11888_high_25 |
 | |
|
Alignment Details
Target: chr7 (Bit Score: 200; Significance: 1e-109; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 200; E-Value: 1e-109
Query Start/End: Original strand, 1 - 229
Target Start/End: Original strand, 25705082 - 25705311
Alignment:
| Q |
1 |
acatttgaaaataccatattagcaaccatagctgttgaatgaatatagtttttt--aaatatttaatacttaatttttactttgtgttggaagactttaa |
98 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
25705082 |
acatttgaaaataccatattagcaaccatagctgttgaatgaatatagtttttttaaaatatttaatacttaatttttactttgtgttggaagactttaa |
25705181 |
T |
|
| Q |
99 |
tggtaaatattttcattgtgaaggcattttcaatgtgaggaatcaaagtttagactccagcagctgaaagaagtgttcaattttagttcagtagcacgat |
198 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| ||| |||||||| |
|
|
| T |
25705182 |
tggtaaatattttcattgtgaaggcattttcaatgtgaggaatcaaagtttagattccagcagctgaaagaagtgttcaattttagtccaggagcacgat |
25705281 |
T |
|
| Q |
199 |
aactatttgatgtttgttgcagaagatactc |
229 |
Q |
| |
|
||||| ||||||||||||||||||||||||| |
|
|
| T |
25705282 |
aacta-ttgatgtttgttgcagaagatactc |
25705311 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 250 - 297
Target Start/End: Original strand, 25705350 - 25705397
Alignment:
| Q |
250 |
aaatatttttccactttccactatatttcgtttgtatatgtgtgttct |
297 |
Q |
| |
|
|||||||||||||||||| ||| |||||| |||||||||||||||||| |
|
|
| T |
25705350 |
aaatatttttccactttctactttatttcatttgtatatgtgtgttct |
25705397 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University