View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11888_high_30 (Length: 276)
Name: NF11888_high_30
Description: NF11888
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11888_high_30 |
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Alignment Details
Target: chr4 (Bit Score: 247; Significance: 1e-137; HSPs: 4)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 247; E-Value: 1e-137
Query Start/End: Original strand, 18 - 268
Target Start/End: Complemental strand, 49043490 - 49043240
Alignment:
| Q |
18 |
tatgcatatgtaattggatctattctaaatcatgttactaaagatcaacgcactttgatgagctgcttgtaattgttataaattgtaatttatttgatga |
117 |
Q |
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| T |
49043490 |
tatgcatatgtaattggatctattctaaatcatgttactaaagatcaacgcactttgatgagctgcttgtaattgttataaattgtaatttatttgatga |
49043391 |
T |
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| Q |
118 |
gtttatgcatgttactaaagaccaaaattacaaatacacactttgattcaaagcacttcattagaagattgatcacaaccacatatatatttgaaggaaa |
217 |
Q |
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| T |
49043390 |
gtttatgcatgttactaaagatcaaaattacaaatacacactttgattcaaagcacttcattagaagattgatcacaaccacatatatatttgaaggaaa |
49043291 |
T |
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| Q |
218 |
taaaaggttttgttttctttttagtggatgctaataactttggacctttgc |
268 |
Q |
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| T |
49043290 |
taaaaggttttgttttctttttagtggatgctaataactttggacctttgc |
49043240 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 80 - 231
Target Start/End: Complemental strand, 49047766 - 49047616
Alignment:
| Q |
80 |
ctgcttgtaattgttataaattgtaatttatttgatgagtttatgcatgttactaaagaccaaaattacaaatacac-actttgattcaaagcacttcat |
178 |
Q |
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| T |
49047766 |
ctgcttgaaattgttttacattgtaatttattttatatgtttatgtgtgctactaaagatcaaaattacaaac-cacgactccgattcaaagcacgtcat |
49047668 |
T |
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| Q |
179 |
tagaagattgatcacaaccacatatatatttgaaggaaataaaaggttttgtt |
231 |
Q |
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| T |
49047667 |
tagaagtttgatcatggccacatatat-ttgaaaggaaataaaaggttttgtt |
49047616 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 102 - 180
Target Start/End: Complemental strand, 48734537 - 48734458
Alignment:
| Q |
102 |
gtaatttatttgatgagtttatgcatgttactaaagaccaaaattacaaatacac-actttgattcaaagcacttcatta |
180 |
Q |
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| T |
48734537 |
gtaatttatttgatgaatttatgcatgttgatcaagatcaaaatcaccattacactactcttattcaaagcacttcatta |
48734458 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 88 - 130
Target Start/End: Complemental strand, 48160530 - 48160488
Alignment:
| Q |
88 |
aattgttataaattgtaatttatttgatgagtttatgcatgtt |
130 |
Q |
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| T |
48160530 |
aattgttttatattgtaattaatttgatgagtttatgcatgtt |
48160488 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 51; Significance: 3e-20; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 99 - 255
Target Start/End: Original strand, 21017307 - 21017465
Alignment:
| Q |
99 |
attgtaatttatttgatgagtttatgcatgttactaaagaccaaaattacaaatacac-actttgattcaaagcacttcattagaaga-ttgatcacaac |
196 |
Q |
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|||||||||||||||||||||||||||||||||||||||| |||||| |||||||||| ||| | |||||| |||||||||||| | ||| ||| | |
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| T |
21017307 |
attgtaatttatttgatgagtttatgcatgttactaaagatcaaaatcacaaatacacgactctagttcaaattacttcattagaaaatttgttcatggc |
21017406 |
T |
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| Q |
197 |
cacatatatatttgaaggaaataaaaggttttgttttct--ttttagtggatgctaataac |
255 |
Q |
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| T |
21017407 |
cac--atatattttaaggaaataaatggttttgctctctaattttagtagacgctaataac |
21017465 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 88 - 130
Target Start/End: Complemental strand, 14197281 - 14197239
Alignment:
| Q |
88 |
aattgttataaattgtaatttatttgatgagtttatgcatgtt |
130 |
Q |
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| T |
14197281 |
aattgttttatattgtaattaatttgatgagtttatgcatgtt |
14197239 |
T |
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