View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11888_high_32 (Length: 265)
Name: NF11888_high_32
Description: NF11888
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11888_high_32 |
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Alignment Details
Target: chr8 (Bit Score: 138; Significance: 3e-72; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 138; E-Value: 3e-72
Query Start/End: Original strand, 17 - 254
Target Start/End: Original strand, 35430343 - 35430569
Alignment:
| Q |
17 |
agtttggaggggaggggaagggaggcaacatagtcacattggtttccccattagtaatcttcctaatgatgaaatataagagaaaatagagaaatctttc |
116 |
Q |
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| T |
35430343 |
agtttggaggggaggggaagggaggcaacatagtcacattggttt-ccctttagtaatcttcctaacgatgaaatataagagaaaattgagaaatctttt |
35430441 |
T |
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| Q |
117 |
nnnnnnntttaaagagtatattttccctcccctccaaactcctaaacaaaacctaagttcactccgttttacatcattatgttcatttatatctatgtac |
216 |
Q |
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|||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |||||||||||||||| | ||||| |
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| T |
35430442 |
aaaaaaaattaaagagtatattttccctcccctctaaactcctaaacaaaacctaagttcactccg----------ttatgttcatttatatttctgtac |
35430531 |
T |
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| Q |
217 |
attcaggttcgctaatgatccattccctctctctgctt |
254 |
Q |
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| T |
35430532 |
attcaggttcgctaatgatccattccctctctgtgctt |
35430569 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 31; Significance: 0.00000002; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 141 - 175
Target Start/End: Original strand, 26571357 - 26571391
Alignment:
| Q |
141 |
ccctcccctccaaactcctaaacaaaacctaagtt |
175 |
Q |
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| T |
26571357 |
ccctcccctccaaactcccaaacaaaacctaagtt |
26571391 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 147 - 175
Target Start/End: Original strand, 8828770 - 8828798
Alignment:
| Q |
147 |
cctccaaactcctaaacaaaacctaagtt |
175 |
Q |
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| T |
8828770 |
cctccaaactcctaaacaaaacctaagtt |
8828798 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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