View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11888_high_38 (Length: 241)
Name: NF11888_high_38
Description: NF11888
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11888_high_38 |
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Alignment Details
Target: chr1 (Bit Score: 139; Significance: 7e-73; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 139; E-Value: 7e-73
Query Start/End: Original strand, 16 - 224
Target Start/End: Complemental strand, 41448722 - 41448504
Alignment:
| Q |
16 |
agataaatttggcatctttcagtaagaag-ttataaagaaaataagccaat---------tcgataaaacgtgaactagccctaccaattcagtagcaat |
105 |
Q |
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| T |
41448722 |
agataattttgggatcgttcagtaagaatattataaagaaaataagccaatgtactccgttggataaaacgtgaactagacctaccatttcagtagcaat |
41448623 |
T |
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| Q |
106 |
gaacaaagttcaattggaaaaattaacaatgattggatacagcctatatggttaagtccgtaagcttgaaaaagcagttatttagtatgagagttaacaa |
205 |
Q |
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| T |
41448622 |
gaacagagttctattggaaaaattaacaatgattggatacagcctatatggttaagtccgtaagcttgaaaaagcagttatttagtatgagagttaacaa |
41448523 |
T |
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| Q |
206 |
ccgaaattcgacgaaaacc |
224 |
Q |
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| T |
41448522 |
acgaaattcgacgaaaacc |
41448504 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 65 - 164
Target Start/End: Complemental strand, 41453476 - 41453377
Alignment:
| Q |
65 |
ttcgataaaacgtgaactagccctaccaattcagtagcaatgaacaaagttcaattggaaaaattaacaatgattggatacagcctatatggttaagtcc |
164 |
Q |
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| T |
41453476 |
ttcgataagacgggaactagacctaccatgtcaatagtaatgaacgaagtttgtttaaaaaaattaacaatgattggatacaacccatatggtgaagtcc |
41453377 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 49; Significance: 4e-19; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 67 - 179
Target Start/End: Complemental strand, 33369903 - 33369791
Alignment:
| Q |
67 |
cgataaaacgtgaactagccctaccaattcagtagcaatgaacaaagttcaattggaaaaattaacaatgattggatacagcctatatggttaagtccgt |
166 |
Q |
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| T |
33369903 |
cgataagacatgaactagacctaccatttcaatagcaatgaacggagctcgatagaaaaaattaacaacgattggatacaacccatatggttaagtccgt |
33369804 |
T |
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| Q |
167 |
aagcttgaaaaag |
179 |
Q |
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|||| ||||||| |
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| T |
33369803 |
cagctcgaaaaag |
33369791 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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