View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF11888_high_7 (Length: 515)
Name: NF11888_high_7
Description: NF11888
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11888_high_7 |
 | |
|
Alignment Details
Target: chr3 (Bit Score: 289; Significance: 1e-162; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 289; E-Value: 1e-162
Query Start/End: Original strand, 15 - 315
Target Start/End: Complemental strand, 41314453 - 41314154
Alignment:
| Q |
15 |
caaagggcaacaaagacgagcggaaatcaatggcagcgaaatgagcaagaatatcatgaagattaacaaagataataatggtaagagcaataagaagaac |
114 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
41314453 |
caaagggcaacaaagacgagcggaaatcaatggcagcaaaatgagcaagaatatcatgaagattaacaaagataataatggtaagagcaataagaagaac |
41314354 |
T |
|
| Q |
115 |
aacgaggcccgaacgggcttcaggagaaagctgggccacaaaaccggaacaaaggatcacggtggcaaatagatataggcctgcgtttatgtattcgtaa |
214 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
41314353 |
aacgaggcccgaacgggcttcaggagaaagctgggccacaaaaccggaacaaaggatcacggtggcaaatagatataggcctgcgtttatgtattcgtaa |
41314254 |
T |
|
| Q |
215 |
cggtttctagtgaggcccgggccgtatgtacggaactctcttgctgaagctagtttcaccattgtctgaaaaggaatgtgtgtgttagtgttgggttggt |
314 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |
|
|
| T |
41314253 |
cggtttctagtgaggcccgggccgtatgtacggaactctcttgctgaagctagtttcaccattgtctgaaaaggaatgtgtgtg-tagtgttgggttggt |
41314155 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 367 - 409
Target Start/End: Complemental strand, 41314102 - 41314060
Alignment:
| Q |
367 |
ttttggattggacacgtggctacttgcatgcagttgtgttggt |
409 |
Q |
| |
|
|||||| ||||||||||||||||||||||| |||||||||||| |
|
|
| T |
41314102 |
ttttggcttggacacgtggctacttgcatggagttgtgttggt |
41314060 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 432 - 461
Target Start/End: Complemental strand, 41314055 - 41314026
Alignment:
| Q |
432 |
tgtgacatgtggcatgagcagagagtaaaa |
461 |
Q |
| |
|
|||||||||||||||||||||||||||||| |
|
|
| T |
41314055 |
tgtgacatgtggcatgagcagagagtaaaa |
41314026 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University