View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11888_high_9 (Length: 504)
Name: NF11888_high_9
Description: NF11888
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11888_high_9 |
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Alignment Details
Target: chr8 (Bit Score: 455; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 455; E-Value: 0
Query Start/End: Original strand, 18 - 503
Target Start/End: Complemental strand, 936624 - 936138
Alignment:
| Q |
18 |
aaaacaagagatgtgcaaggtgtggattcaaaaagttctacaatcagagtaccataaaacaagagaacaaaaaggcaaacagctggattatgcaaccctt |
117 |
Q |
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|||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
936624 |
aaaacaagagatgtgcaaggtgtggattcaaaaatttctacaatcagagtaccataaaacaagagaacaaaaaggcaaacagctggattatgcaaccctt |
936525 |
T |
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| Q |
118 |
gcttatatacatgttcttcagtaactgctcctctttttctttctctcaacccttgcattcttcttcttcctcattagtactattctcacgatttgaaata |
217 |
Q |
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|||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
936524 |
gcttatatacatgttcttcagtaactgctcttctttttctttctctcaacccttgcattcttcttcttcctcattagtactattctcacgatttgaaata |
936425 |
T |
|
| Q |
218 |
cacttccccataaccttaaaatagatatcctcatatgtttgtgtatctaaaccctcctcgtcaatcattatatgtatagcatcaaatttagcatcccagg |
317 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |
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| T |
936424 |
cacttccccataaccttaaaatagatatcctcatatgtttgtgtatctaaaccctccttgtcaatcattatatgtatagcatcaaatttagcatcccagg |
936325 |
T |
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| Q |
318 |
cttcattctttccgagtgagtgattcctggatgttaaaaaattcaaatacgcacataaacaaaaattgtgtaacttgtgtcaaaagcattgctaaaagcc |
417 |
Q |
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|||||| |||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |
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| T |
936324 |
cttcatgctttccgagtgagtgattcctggatgttaagaaattcaaatacgcacataaacaaaaattctgtaacttgtgtcaaaagcattgctaaaagcc |
936225 |
T |
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| Q |
418 |
ccataaacggctttgccttcacggcttcaccccatgaggaagctttctctttttgcattctactttttgctcct-ttgcttctcctc |
503 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |
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| T |
936224 |
ccataaacggctttgccttcacggcttcaccccatgaggaagctttctctttttgcattctactttttgctcctcttgcttctcctc |
936138 |
T |
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