View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF11888_low_1 (Length: 885)

Name: NF11888_low_1
Description: NF11888
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF11888_low_1
NF11888_low_1
[»] chr1 (1 HSPs)
chr1 (100-878)||(51151306-51152085)


Alignment Details
Target: chr1 (Bit Score: 651; Significance: 0; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 651; E-Value: 0
Query Start/End: Original strand, 100 - 878
Target Start/End: Original strand, 51151306 - 51152085
Alignment:
Q  100 gtctgcagtacaaatgtgtagtcaagttttagactttcattttaccnnnnnnngttatgaactttcagnnnnnnnaggtggagattttctgctaatggta 199  Q
    ||||||||||||||||||||||||||||||||||||||||||||||       |||||||||||||||       ||||||||||||| |||||||||||    
T  51151306 gtctgcagtacaaatgtgtagtcaagttttagactttcattttaccaaaaaaagttatgaactttcagtttttttaggtggagattttttgctaatggta 51151405  T
Q  200 cagtttttaaggattagtttatttcactaacactaaaccactactaataactgcannnnnnnattaataattactacatttatttttatgtacttggtac 299  Q
    |||||||||||||||||||||||||||||||||||||||||||||| ||||||||       ||||||||||||||||||||||||||||||||||||||    
T  51151406 cagtttttaaggattagtttatttcactaacactaaaccactactagtaactgcatttttttattaataattactacatttatttttatgtacttggtac 51151505  T
Q  300 taaccattatgttccttgctcttgtttgtgagtagtgttgaacttcctgagacaagatgctgctgattttctgtcaaagaggaaatggtttaactcagtc 399  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  51151506 taaccattatgttccttgctcttgtttgtgagtagtgttgaacttcctgagacaagatgctgctgattttctgtcaaagaggaaatggtttaactcagtc 51151605  T
Q  400 ttggtnnnnnnngaaacnnnnnnn-gtgttcttagaaacccatttgaaagtttcatctctctgtctgtgaaagttccctcctttttgtcagagaaaacaa 498  Q
    |||||       |||||        |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  51151606 ttggtaaaaaaagaaacttttttttgtgttcttagaaacccatttgaaagtttcatctctctgtctgtgaaagttccctcctttttgtcagagaaaacaa 51151705  T
Q  499 caacacattcctgaatctatcaagcaagagcctttctttcttgcttcattttctaaaggaaaaaaccaaagaagataagggttagtgttaaagatggggt 598  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||    
T  51151706 caacacattcctgaatctatcaagcaagagcctttctttcttgcttcattttctaaaggaaaaaaccaaagaagataagggttactgttaaagatggggt 51151805  T
Q  599 gtgttgcctcaaaactagaggaagaagaggaagtagtagctatttgtagagagagaaaacgtcagctgaaactagctgtagagaaaagatatgcacttgc 698  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  51151806 gtgttgcctcaaaactagaggaagaagaggaagtagtagctatttgtagagagagaaaacgtcagctgaaactagctgtagagaaaagatatgcacttgc 51151905  T
Q  699 tgaagctcattgtaaatattttcactctttgaatgctgtagctgctgctattaagctttttgttgcaagacattcttcaccttcttcacctttccttata 798  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  51151906 tgaagctcattgtaaatattttcactctttgaatgctgtagctgctgctattaagctttttgttgcaagacattcttcaccttcttcacctttccttata 51152005  T
Q  799 actttccctcctaagggtcttgacccttctccttctcattcatctgctgaaaatgtcataaataaccctatgcttctcca 878  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||    
T  51152006 actttccctcctaagggtcttgacccttctccttctcattcatctgctgaaaatgtcataaataaccctatgtttctcca 51152085  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University