View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11888_low_10 (Length: 503)
Name: NF11888_low_10
Description: NF11888
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11888_low_10 |
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Alignment Details
Target: chr3 (Bit Score: 437; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 437; E-Value: 0
Query Start/End: Original strand, 37 - 489
Target Start/End: Original strand, 29527256 - 29527708
Alignment:
| Q |
37 |
tcttctccctcgtaatcttctcaactttcattttccattcactttcgatctccacagacacattcctctacggtgggtgcacacaagaaaaatacacccc |
136 |
Q |
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|||||||||||||||||||||||||||||||| ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
29527256 |
tcttctccctcgtaatcttctcaactttcattctccattcactttccatctccacagacacattcctctacggtgggtgcacacaagaaaaatacacccc |
29527355 |
T |
|
| Q |
137 |
aacctacgaatccaacctaaactcactcctcacatccctaatcaactcagcaacctacacatcctacaataacttcaccatcatctcctcaaaccctaac |
236 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
29527356 |
aacctacgaatccaacctaaactcactcctcacatccctaatcaactcagcaacctacacatcctacaataacttcaccatcatctcctcaaaccctaac |
29527455 |
T |
|
| Q |
237 |
gacatcgtctacggcgtctaccaatgtcgcggcgacatctccatgccagactgctcctcctgcattgcacgcgccgtctcacgcaccggtgacatatgtc |
336 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |
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| T |
29527456 |
gacatcgtctacggcgtctaccaatgtcgcggcgacatctccatgccagactgctcctcctgcattgcacgtgccgtctcacgcaccggtgacatatgtc |
29527555 |
T |
|
| Q |
337 |
ctggcgtgtgcggcggcgtagtgcaactagaaggatgttatgtgaaatatgacaatgttaagtttttaggcatgcaagataaaacgattgtgttgaagaa |
436 |
Q |
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|||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
29527556 |
ctggcgtgtgcggcggcgtagtgcaactagaagggtgttatgtgaaatatgacaatgttaagtttttaggcatgcaagataaaacgattgtgttgaagaa |
29527655 |
T |
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| Q |
437 |
atgtgggcctgaagtagggtatgacccgggtacgatagatgctgtgttgggtg |
489 |
Q |
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| T |
29527656 |
atgtgggcctgaagtagggtatgacccgggtacgatagatgctgtgttgggtg |
29527708 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 37; Significance: 0.00000000001; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 139 - 215
Target Start/End: Original strand, 33327448 - 33327524
Alignment:
| Q |
139 |
cctacgaatccaacctaaactcactcctcacatccctaatcaactcagcaacctacacatcctacaataacttcacc |
215 |
Q |
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||||||| || |||||||| ||||||||||| || ||| |||| |||||||| ||| |||||||||| ||||||||| |
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| T |
33327448 |
cctacgagtcaaacctaaattcactcctcacttcactagtcaattcagcaacatactcatcctacaacaacttcacc |
33327524 |
T |
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