View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF11888_low_11 (Length: 500)

Name: NF11888_low_11
Description: NF11888
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF11888_low_11
NF11888_low_11
[»] chr2 (7 HSPs)
chr2 (17-486)||(12694488-12694957)
chr2 (327-379)||(12133967-12134019)
chr2 (317-384)||(28425633-28425700)
chr2 (319-383)||(11912683-11912747)
chr2 (317-392)||(21665619-21665694)
chr2 (323-368)||(44914846-44914891)
chr2 (324-376)||(37182760-37182812)
[»] chr1 (5 HSPs)
chr1 (323-384)||(45758623-45758684)
chr1 (317-371)||(38853645-38853699)
chr1 (321-381)||(35392393-35392453)
chr1 (249-292)||(47896001-47896045)
chr1 (324-380)||(50146424-50146480)
[»] chr5 (5 HSPs)
chr5 (324-384)||(10407578-10407638)
chr5 (321-392)||(35080687-35080758)
chr5 (323-393)||(27530610-27530680)
chr5 (324-385)||(40794248-40794309)
chr5 (323-379)||(33037898-33037954)
[»] scaffold1590 (1 HSPs)
scaffold1590 (317-391)||(177-251)
[»] chr4 (4 HSPs)
chr4 (317-369)||(5893127-5893179)
chr4 (317-389)||(11906822-11906894)
chr4 (317-369)||(39329332-39329384)
chr4 (325-391)||(24614077-24614143)
[»] chr7 (7 HSPs)
chr7 (325-384)||(26917656-26917715)
chr7 (324-395)||(6765598-6765669)
chr7 (317-391)||(18201246-18201319)
chr7 (317-391)||(23744906-23744980)
chr7 (327-392)||(12419412-12419477)
chr7 (317-390)||(23020404-23020476)
chr7 (325-369)||(9014119-9014163)
[»] chr8 (6 HSPs)
chr8 (318-380)||(5973037-5973099)
chr8 (317-366)||(34789806-34789855)
chr8 (317-384)||(4097815-4097882)
chr8 (324-391)||(38009070-38009137)
chr8 (317-390)||(7944442-7944515)
chr8 (317-362)||(8103024-8103069)
[»] chr6 (2 HSPs)
chr6 (324-378)||(27131131-27131185)
chr6 (324-401)||(20611908-20611985)
[»] chr3 (1 HSPs)
chr3 (319-393)||(36179474-36179548)
[»] scaffold0012 (1 HSPs)
scaffold0012 (317-388)||(206413-206482)


Alignment Details
Target: chr2 (Bit Score: 394; Significance: 0; HSPs: 7)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 394; E-Value: 0
Query Start/End: Original strand, 17 - 486
Target Start/End: Original strand, 12694488 - 12694957
Alignment:
Q  17 accattgataatgtgttgcttggatagatcttgtgttttgtgcaagacttaatggttcaaaaagaactttcattcgtaagaagtgatttatgttgaggga 116  Q
    ||||||||||||||||||||| |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  12694488 accattgataatgtgttgctttgatagatcttgtgttttgtgtaagacttaatggttcaaaaagaactttcattcgtaagaagtgatttatgttgaggga 12694587  T
Q  117 ggtgctcgcggagagctaagagattgtatcaaacttgatagttcgaagagagctaagagattgtatgaaggtgaggccatggcaatgaaagcaccaattt 216  Q
     ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |    
T  12694588 cgtgctcgcggagagctaagagattgtatcaaacttgatagttcgaagagagctaagagattgtatgaaggtgaggccatggcaatgaaagcaccaatgt 12694687  T
Q  217 aaggtaccacttttgatggtacctacaagaaaggagaaattactctaaaaggactaaaagctacaattaccctattctaaacaattaatccatggcaatg 316  Q
    ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||  ||||| ||||||||||||||||||||||    
T  12694688 aaggtgccacttttgatggtacctacaagaaaggagaaattactctaaaaggactaaaagctacaattactgtattccaaacaattaatccatggcaatg 12694787  T
Q  317 aaatatatttttattttattatggacctcttttcatttatagagccgagcctctggattcgtaagaacagccctgacccaaagtaatatagaattcggct 416  Q
    ||||||||||||||||||||| ||  ||||||||| ||| ||||||||||||| ||||||||||||||||| ||||||||| |||||||||| |||||||    
T  12694788 aaatatatttttattttattacgggtctcttttcacttacagagccgagcctccggattcgtaagaacagctctgacccaacgtaatatagagttcggct 12694887  T
Q  417 aagaggggtcaaaatccgactaaggattgttcccattagatatcgaactttattcctctggatgtttcat 486  Q
    ||||||||| |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||    
T  12694888 aagaggggttaaaatccgactaagaattgttcccattagatatcgaactttattcctctggatgtttcat 12694957  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 327 - 379
Target Start/End: Complemental strand, 12134019 - 12133967
Alignment:
Q  327 ttattttattatggacctcttttcatttatagagccgagcctctggattcgta 379  Q
    ||||||||||| ||||||||||||| ||| ||| |||||||||||||||||||    
T  12134019 ttattttattacggacctcttttcacttacagaaccgagcctctggattcgta 12133967  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 317 - 384
Target Start/End: Complemental strand, 28425700 - 28425633
Alignment:
Q  317 aaatatatttttattttattatggacctcttttcatttatagagccgagcctctggattcgtaagaac 384  Q
    ||||| ||||||||||||||| ||||||||||||||||| | |  |||||||||| ||||||| ||||    
T  28425700 aaatacatttttattttattacggacctcttttcatttacaaaaacgagcctctgaattcgtaggaac 28425633  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 319 - 383
Target Start/End: Complemental strand, 11912747 - 11912683
Alignment:
Q  319 atatatttttattttattatggacctcttttcatttatagagccgagcctctggattcgtaagaa 383  Q
    |||| |||||||||||||| |||  |||||||| ||||||||||||||||| | ||| |||||||    
T  11912747 atatgtttttattttattacggatatcttttcacttatagagccgagcctccgaatttgtaagaa 11912683  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 317 - 392
Target Start/End: Complemental strand, 21665694 - 21665619
Alignment:
Q  317 aaatatatttttattttattatggacctcttttcatttatagagccgagcctctggattcgtaagaacagccctga 392  Q
    ||||| ||||||||||||||| ||  ||||||||| ||| |||||||| ||||  |||||||| ||||| ||||||    
T  21665694 aaatacatttttattttattacgggtctcttttcacttacagagccgaccctccagattcgtaggaacaaccctga 21665619  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 323 - 368
Target Start/End: Complemental strand, 44914891 - 44914846
Alignment:
Q  323 atttttattttattatggacctcttttcatttatagagccgagcct 368  Q
    ||||||||||||||| ||||||||||||| ||| ||||| ||||||    
T  44914891 atttttattttattacggacctcttttcacttacagagctgagcct 44914846  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 324 - 376
Target Start/End: Original strand, 37182760 - 37182812
Alignment:
Q  324 tttttattttattatggacctcttttcatttatagagccgagcctctggattc 376  Q
    |||||||||||||| ||  ||||||||| ||| ||||||||||||| ||||||    
T  37182760 tttttattttattacgggtctcttttcacttacagagccgagcctccggattc 37182812  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 42; Significance: 0.00000000000001; HSPs: 5)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 323 - 384
Target Start/End: Original strand, 45758623 - 45758684
Alignment:
Q  323 atttttattttattatggacctcttttcatttatagagccgagcctctggattcgtaagaac 384  Q
    ||||||||||||||  ||||||||||||| ||| ||||||||||||||||||||||| ||||    
T  45758623 atttttattttatttcggacctcttttcacttacagagccgagcctctggattcgtaggaac 45758684  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 317 - 371
Target Start/End: Original strand, 38853645 - 38853699
Alignment:
Q  317 aaatatatttttattttattatggacctcttttcatttatagagccgagcctctg 371  Q
    ||||| |||||||||||||||||  |||| ||||| ||||||||||||| |||||    
T  38853645 aaatacatttttattttattatgtgcctcatttcacttatagagccgagtctctg 38853699  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 321 - 381
Target Start/End: Original strand, 35392393 - 35392453
Alignment:
Q  321 atatttttattttattatggacctcttttcatttatagagccgagcctctggattcgtaag 381  Q
    |||||||||||||||||||||| | |||||| ||| |||| |||| ||| |||||| ||||    
T  35392393 atatttttattttattatggacattttttcacttacagagtcgagtctccggattcataag 35392453  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 249 - 292
Target Start/End: Complemental strand, 47896045 - 47896001
Alignment:
Q  249 ggagaaattactctaaaa-ggactaaaagctacaattaccctatt 292  Q
    |||||||||||||||||| ||||||||| |||||||||| |||||    
T  47896045 ggagaaattactctaaaagggactaaaacctacaattacactatt 47896001  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 324 - 380
Target Start/End: Original strand, 50146424 - 50146480
Alignment:
Q  324 tttttattttattatggacctcttttcatttatagagccgagcctctggattcgtaa 380  Q
    |||||||||||| ||||  ||| ||||||||| ||||||||||||| | ||||||||    
T  50146424 tttttattttatcatgggtctcgtttcatttacagagccgagcctccgaattcgtaa 50146480  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 41; Significance: 0.00000000000005; HSPs: 5)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 324 - 384
Target Start/End: Original strand, 10407578 - 10407638
Alignment:
Q  324 tttttattttattatggacctcttttcatttatagagccgagcctctggattcgtaagaac 384  Q
    |||||||||||||||||||||||||||| ||||||| |||| ||||| |||||||| ||||    
T  10407578 tttttattttattatggacctcttttcacttatagaaccgaacctctagattcgtaggaac 10407638  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 321 - 392
Target Start/End: Complemental strand, 35080758 - 35080687
Alignment:
Q  321 atatttttattttattatggacctcttttcatttatagagccgagcctctggattcgtaagaacagccctga 392  Q
    ||||||||||||||||| || |||||||||| ||| |||| ||||||||| |||||||| |||| |||||||    
T  35080758 atatttttattttattacggccctcttttcacttacagagtcgagcctctagattcgtaggaacggccctga 35080687  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 323 - 393
Target Start/End: Original strand, 27530610 - 27530680
Alignment:
Q  323 atttttattttattatggacctcttttcatttatagagccgagcctctggattcgtaagaacagccctgac 393  Q
    ||||||||||||||| || |||||||||| ||||||| ||||||||||  ||||||| |||| ||||||||    
T  27530610 atttttattttattacgggcctcttttcacttatagaaccgagcctctaaattcgtaggaacggccctgac 27530680  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 324 - 385
Target Start/End: Complemental strand, 40794309 - 40794248
Alignment:
Q  324 tttttattttattatggacctcttttcatttatagagccgagcctctggattcgtaagaaca 385  Q
    |||||||||||||| |  |||||||||| ||| ||||||||||||| | ||||||| |||||    
T  40794309 tttttattttattacgagcctcttttcacttacagagccgagcctccgaattcgtatgaaca 40794248  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 323 - 379
Target Start/End: Original strand, 33037898 - 33037954
Alignment:
Q  323 atttttattttattatggacctcttttcatttatagagccgagcctctggattcgta 379  Q
    ||||||||||||||| |  |||||||||  ||| ||||||||||||||| |||||||    
T  33037898 atttttattttattacgagcctcttttcggttacagagccgagcctctgaattcgta 33037954  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1590 (Bit Score: 39; Significance: 0.0000000000008; HSPs: 1)
Name: scaffold1590
Description:

Target: scaffold1590; HSP #1
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 317 - 391
Target Start/End: Complemental strand, 251 - 177
Alignment:
Q  317 aaatatatttttattttattatggacctcttttcatttatagagccgagcctctggattcgtaagaacagccctg 391  Q
    ||||| |||||||||||||||||| ||||| |||| ||  ||||||||||||||||||| | |||||| ||||||    
T  251 aaatacatttttattttattatgggcctctattcacttgcagagccgagcctctggatttgaaagaacggccctg 177  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 37; Significance: 0.00000000001; HSPs: 4)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 317 - 369
Target Start/End: Original strand, 5893127 - 5893179
Alignment:
Q  317 aaatatatttttattttattatggacctcttttcatttatagagccgagcctc 369  Q
    ||||| ||||||||||||||| ||||||||||||| ||| |||||||||||||    
T  5893127 aaatacatttttattttattacggacctcttttcacttacagagccgagcctc 5893179  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 317 - 389
Target Start/End: Complemental strand, 11906894 - 11906822
Alignment:
Q  317 aaatatatttttattttattatggacctcttttcatttatagagccgagcctctggattcgtaagaacagccc 389  Q
    ||||| ||||||||||||||| || |||||||||| ||||| ||||||||||| | ||||||| |||| ||||    
T  11906894 aaatacatttttattttattacgggcctcttttcacttatatagccgagcctccgaattcgtaggaacggccc 11906822  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 317 - 369
Target Start/End: Complemental strand, 39329384 - 39329332
Alignment:
Q  317 aaatatatttttattttattatggacctcttttcatttatagagccgagcctc 369  Q
    |||||| |||||||||||||| ||||||||||||| ||| ||| |||||||||    
T  39329384 aaatatgtttttattttattacggacctcttttcacttacagaaccgagcctc 39329332  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 325 - 391
Target Start/End: Original strand, 24614077 - 24614143
Alignment:
Q  325 ttttattttattatggacctcttttcatttatagagccgagcctctggattcgtaagaacagccctg 391  Q
    ||||||||||||| || |||||||||| ||| ||||| || ||||  ||||||||||||| ||||||    
T  24614077 ttttattttattacgggcctcttttcacttacagagctgaacctccagattcgtaagaacggccctg 24614143  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 36; Significance: 0.00000000005; HSPs: 7)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 325 - 384
Target Start/End: Complemental strand, 26917715 - 26917656
Alignment:
Q  325 ttttattttattatggacctcttttcatttatagagccgagcctctggattcgtaagaac 384  Q
    ||||||||||||| ||||||||||||| ||| |||| | ||||||| |||||||||||||    
T  26917715 ttttattttattacggacctcttttcacttacagagtcaagcctctagattcgtaagaac 26917656  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 324 - 395
Target Start/End: Complemental strand, 6765669 - 6765598
Alignment:
Q  324 tttttattttattatggacctcttttcatttatagagccgagcctctggattcgtaagaacagccctgaccc 395  Q
    |||||||||||||| |  ||||||||||| || ||| | ||||||| ||||||||| ||||| |||||||||    
T  6765669 tttttattttattacgagcctcttttcatctacagaactgagcctccggattcgtaggaacaaccctgaccc 6765598  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 317 - 391
Target Start/End: Original strand, 18201246 - 18201319
Alignment:
Q  317 aaatatatttttattttattatggacctcttttcatttatagagccgagcctctggattcgtaagaacagccctg 391  Q
    ||||||||||||||||||||| |||| || ||||| ||  ||||||||||||| ||||||||  |||| ||||||    
T  18201246 aaatatatttttattttattacggacatc-tttcacttgcagagccgagcctccggattcgtgggaacggccctg 18201319  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 317 - 391
Target Start/End: Original strand, 23744906 - 23744980
Alignment:
Q  317 aaatatatttttattttattatggacctcttttcatttatagagccgagcctctggattcgtaagaacagccctg 391  Q
    ||||| ||||||||||| ||| || |||||||||| ||||||||| |||||||   ||||||| |||| ||||||    
T  23744906 aaatacatttttatttttttacgggcctcttttcacttatagagctgagcctccaaattcgtaggaacggccctg 23744980  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 327 - 392
Target Start/End: Complemental strand, 12419477 - 12419412
Alignment:
Q  327 ttattttattatggacctcttttcatttatagagccgagcctctggattcgtaagaacagccctga 392  Q
    ||||||||||| || |||||||||| ||| | ||||||||||| |||||| || |||| |||||||    
T  12419477 ttattttattacgggcctcttttcacttacaaagccgagcctccggattcataggaacggccctga 12419412  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 317 - 390
Target Start/End: Complemental strand, 23020476 - 23020404
Alignment:
Q  317 aaatatatttttattttattatggacctcttttcatttatagagccgagcctctggattcgtaagaacagccct 390  Q
    ||||| ||||||||||||||| ||||||||||||| ||| ||| ||| |||||  |||||||| |||| |||||    
T  23020476 aaatacatttttattttattacggacctcttttcacttacagaaccg-gcctccagattcgtaggaacggccct 23020404  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 325 - 369
Target Start/End: Complemental strand, 9014163 - 9014119
Alignment:
Q  325 ttttattttattatggacctcttttcatttatagagccgagcctc 369  Q
    ||||||||||||| || |||||||||| |||||||| ||||||||    
T  9014163 ttttattttattacgggcctcttttcacttatagagtcgagcctc 9014119  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 35; Significance: 0.0000000002; HSPs: 6)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 318 - 380
Target Start/End: Complemental strand, 5973099 - 5973037
Alignment:
Q  318 aatatatttttattttattatggacctcttttcatttatagagccgagcctctggattcgtaa 380  Q
    |||| |||||||||||||||  |||||||||||||||| |||||| |||||| ||| ||||||    
T  5973099 aatacatttttattttattacagacctcttttcatttacagagccaagcctccggaatcgtaa 5973037  T

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Target: chr8; HSP #2
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 317 - 366
Target Start/End: Complemental strand, 34789855 - 34789806
Alignment:
Q  317 aaatatatttttattttattatggacctcttttcatttatagagccgagc 366  Q
    ||||| ||||||||||||||| |||||| |||||| ||||||||||||||    
T  34789855 aaatacatttttattttattacggaccttttttcacttatagagccgagc 34789806  T

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Target: chr8; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 317 - 384
Target Start/End: Original strand, 4097815 - 4097882
Alignment:
Q  317 aaatatatttttattttattatggacctcttttcatttatagagccgagcctctggattcgtaagaac 384  Q
    |||| |||||||||||||||| ||| ||||||| ||||| ||||| ||  |||||||||| |||||||    
T  4097815 aaatgtatttttattttattacggatctctttttatttacagagctgaatctctggattcataagaac 4097882  T

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Target: chr8; HSP #4
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 324 - 391
Target Start/End: Complemental strand, 38009137 - 38009070
Alignment:
Q  324 tttttattttattatggacctcttttcatttatagagccgagcctctggattcgtaagaacagccctg 391  Q
    |||||||||||||| |||| |||||||| ||| ||| ||||||||| |||||| || |||| ||||||    
T  38009137 tttttattttattacggacttcttttcagttacagaaccgagcctccggattcataggaacggccctg 38009070  T

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Target: chr8; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 317 - 390
Target Start/End: Complemental strand, 7944515 - 7944442
Alignment:
Q  317 aaatatatttttattttattatggacctcttttcatttatagagccgagcctctggattcgtaagaacagccct 390  Q
    ||||| ||||||||||||||| ||||||||||||| ||| |||  ||||| ||  |||||||| |||| |||||    
T  7944515 aaatacatttttattttattacggacctcttttcaattacagaatcgagcttcctgattcgtaggaacggccct 7944442  T

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Target: chr8; HSP #6
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 317 - 362
Target Start/End: Original strand, 8103024 - 8103069
Alignment:
Q  317 aaatatatttttattttattatggacctcttttcatttatagagcc 362  Q
    ||||| |||||||||||||||| | |||||||||||||| ||||||    
T  8103024 aaatacatttttattttattataggcctcttttcatttacagagcc 8103069  T

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Target: chr6 (Bit Score: 35; Significance: 0.0000000002; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 324 - 378
Target Start/End: Complemental strand, 27131185 - 27131131
Alignment:
Q  324 tttttattttattatggacctcttttcatttatagagccgagcctctggattcgt 378  Q
    ||||||||||||||  || ||||||||||||||||||  ||||||||||||||||    
T  27131185 tttttattttattacagatctcttttcatttatagagttgagcctctggattcgt 27131131  T

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Target: chr6; HSP #2
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 324 - 401
Target Start/End: Original strand, 20611908 - 20611985
Alignment:
Q  324 tttttattttattatggacctcttttcatttatagagccgagcctctggattcgtaagaacagccctgacccaaagta 401  Q
    |||||||||| |||||| |||||||||| ||| ||||||||||||| | ||||||| ||||  |||||| || |||||    
T  20611908 tttttatttttttatgggcctcttttcacttacagagccgagcctccgaattcgtaggaacgaccctgatcccaagta 20611985  T

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Target: chr3 (Bit Score: 35; Significance: 0.0000000002; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 319 - 393
Target Start/End: Complemental strand, 36179548 - 36179474
Alignment:
Q  319 atatatttttattttattatggacctcttttcatttatagagccgagcctctggattcgtaagaacagccctgac 393  Q
    ||||||||||||||||||| || |||||||||| |||| |  || |||||| ||||||||| |||| ||||||||    
T  36179548 atatatttttattttattacgggcctcttttcacttatgggaccaagcctccggattcgtaggaacggccctgac 36179474  T

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Target: scaffold0012 (Bit Score: 29; Significance: 0.0000007; HSPs: 1)
Name: scaffold0012
Description:

Target: scaffold0012; HSP #1
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 317 - 388
Target Start/End: Complemental strand, 206482 - 206413
Alignment:
Q  317 aaatatatttttattttattatggacctcttttcatttatagagccgagcctctggattcgtaagaacagcc 388  Q
    ||||| |||||||||||||||   ||||||||||| ||| ||||||  ||||| ||||||||| ||||||||    
T  206482 aaatacatttttattttattacaaacctcttttcacttacagagcc--gcctcaggattcgtaggaacagcc 206413  T

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