View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF11888_low_12 (Length: 495)

Name: NF11888_low_12
Description: NF11888
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF11888_low_12
NF11888_low_12
[»] chr1 (2 HSPs)
chr1 (1-479)||(9581528-9582006)
chr1 (1-468)||(9587099-9587553)
[»] chr7 (3 HSPs)
chr7 (104-227)||(10615654-10615777)
chr7 (100-229)||(10169040-10169169)
chr7 (100-229)||(10176565-10176694)
[»] chr4 (14 HSPs)
chr4 (100-216)||(1755490-1755606)
chr4 (171-276)||(553767-553872)
chr4 (313-360)||(1524177-1524224)
chr4 (2-55)||(532662-532715)
chr4 (160-209)||(3437630-3437679)
chr4 (159-267)||(661854-661962)
chr4 (322-362)||(2373334-2373374)
chr4 (161-229)||(2547289-2547357)
chr4 (158-210)||(55907684-55907736)
chr4 (242-281)||(1481722-1481761)
chr4 (425-471)||(548271-548317)
chr4 (241-275)||(53760237-53760271)
chr4 (163-212)||(571330-571379)
chr4 (165-217)||(5106558-5106610)
[»] chr6 (7 HSPs)
chr6 (91-218)||(6417020-6417147)
chr6 (158-227)||(7132300-7132369)
chr6 (159-227)||(7135224-7135292)
chr6 (159-227)||(7138147-7138215)
chr6 (158-265)||(8913374-8913481)
chr6 (100-146)||(9412061-9412107)
chr6 (165-218)||(6423907-6423960)
[»] chr5 (2 HSPs)
chr5 (242-351)||(32268614-32268723)
chr5 (165-270)||(41900443-41900548)
[»] chr3 (2 HSPs)
chr3 (158-275)||(51763334-51763451)
chr3 (91-227)||(13469641-13469777)
[»] chr2 (1 HSPs)
chr2 (158-210)||(1036620-1036672)
[»] chr8 (3 HSPs)
chr8 (88-274)||(32151893-32152079)
chr8 (160-264)||(14004140-14004244)
chr8 (241-281)||(17642873-17642913)


Alignment Details
Target: chr1 (Bit Score: 303; Significance: 1e-170; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 303; E-Value: 1e-170
Query Start/End: Original strand, 1 - 479
Target Start/End: Original strand, 9581528 - 9582006
Alignment:
Q  1 tttgcggagtctgaaaagtgctaacgaaagagtctctaccccatggagaaagctattgcaaccgtcgatacaaagtaaagggtcattgaggtcaagtatt 100  Q
    ||||||||||||| ||| |||||| ||||||||||||||||||||||||| ||||||||||||||||||||||| ||||||| |||||||||||||||||    
T  9581528 tttgcggagtctggaaaatgctaatgaaagagtctctaccccatggagaatgctattgcaaccgtcgatacaaaataaagggccattgaggtcaagtatt 9581627  T
Q  101 tcaagtaaagggaaacattcggcaatgaggaacaagtcattactatagaaatcacagatgttggaacaaatgagagatgtcaaagttgtaatctttaagg 200  Q
    ||||||||||| |||||||||||||||||||||||||||||||||| ||||  || |||||| |||||||||||||||||||| ||||||||||||| ||    
T  9581628 tcaagtaaaggaaaacattcggcaatgaggaacaagtcattactattgaaaatacggatgttcgaacaaatgagagatgtcaacgttgtaatctttacgg 9581727  T
Q  201 agaaagctcgcaacccatgtgcaggaatgtaagtttggcgggagagattgagcgatgtgagtttcaatgggaaacatgagacttgagacaaaagctcgtt 300  Q
    ||||||||||||  ||||  ||||||||||| | |||| ||||||||||||||||||||||||||||||||||||| ||||||||| ||| |||||||||    
T  9581728 agaaagctcgcagtccatcagcaggaatgtaggattggtgggagagattgagcgatgtgagtttcaatgggaaacaagagacttgatacagaagctcgtt 9581827  T
Q  301 gaggttacttatgtaccacgtgaggtcgagggaggtgaggttggtgaatctttggaagaggccatagggaagagggtgtgttgattcacagcaggcaggc 400  Q
    |||||||| | ||||||||||||||||||||||||||||||||||||||||||||||||||| | |||||||| || |||||||||||| || ||  | |    
T  9581828 gaggttacctctgtaccacgtgaggtcgagggaggtgaggttggtgaatctttggaagaggcgagagggaagaaggcgtgttgattcactgccggaggac 9581927  T
Q  401 acagccaaagaaaataggaaaccgttggtaatggagagtaactgtttggagacaacagaaagagacttcaaatagaaac 479  Q
    || || ||||||||||||| ||||||||| || ||||| |||||||||||||| |||||||||||||| || |||||||    
T  9581928 acggcgaaagaaaataggagaccgttggtgatagagagaaactgtttggagacgacagaaagagacttgaagtagaaac 9582006  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 251; E-Value: 1e-139
Query Start/End: Original strand, 1 - 468
Target Start/End: Original strand, 9587099 - 9587553
Alignment:
Q  1 tttgcggagtctgaaaagtgctaacgaaagagtctctaccccatggagaaagctattgcaaccgtcgatacaaagtaaagggtcattgaggtcaagtatt 100  Q
    |||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| ||||  ||||| |||||||||| | ||||||||||||    
T  9587099 tttgcggagtctgaaaagtgctaacgaaagagtctcaaccccatggagaaagctattgcaactgtcgtcacaaattaaagggtcacttaggtcaagtatt 9587198  T
Q  101 tcaagtaaagggaaacattcggcaatgaggaacaagtcattactatagaaatcacagatgttggaacaaatgagagatgtcaaagttgtaatctttaagg 200  Q
    ||||||||||||||||||| |||||||||||||||||||||||||| |||| ||| |||||| |||||||||||||||||||| ||||||||||||||||    
T  9587199 tcaagtaaagggaaacatttggcaatgaggaacaagtcattactattgaaaacacggatgtttgaacaaatgagagatgtcaacgttgtaatctttaagg 9587298  T
Q  201 agaaagctcgcaacccatgtgcaggaatgtaagtttggcgggagagattgagcgatgtgagtttcaatgggaaacatgagacttgagacaaaagctcgtt 300  Q
    |||||||  ||||||||  ||| |||||| | | ||| | |||||||||||||||||||||||||||||||||||| ||||||||||| | |||||||||    
T  9587299 agaaagcatgcaacccaattgcgggaatgcaggattgactggagagattgagcgatgtgagtttcaatgggaaacaagagacttgagatagaagctcgtt 9587398  T
Q  301 gaggttacttatgtaccacgtgaggtcgagggaggtgaggttggtgaatctttggaagaggccatagggaagagggtgtgttgattcacagcaggcaggc 400  Q
    ||||| || | |||| | |||||||||||||||||||||||||||||||||||| |||| || | ||||||||||||            |  ||||||||    
T  9587399 gaggtcacctttgtagc-cgtgaggtcgagggaggtgaggttggtgaatctttgaaagacgcgagagggaagagggt------------aaaaggcaggc 9587485  T
Q  401 acagccaaagaaaataggaaaccgttggtaatggagagtaactgtttggagacaacagaaagagactt 468  Q
    ||||||||||||||||||| ||| ||||| | |||||| |||||||||||||| ||||||||||||||    
T  9587486 acagccaaagaaaataggagaccattggtgacggagagaaactgtttggagacgacagaaagagactt 9587553  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 52; Significance: 1e-20; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 104 - 227
Target Start/End: Original strand, 10615654 - 10615777
Alignment:
Q  104 agtaaagggaaacattcggcaatgaggaacaagtcattactatagaaatcacagatgttggaacaaatgagagatgtcaaagttgtaatctttaaggaga 203  Q
    ||||||||||||||||| ||||| |||||||  ||| |||||| ||| | |  ||||| ||||||| ||||||| ||||||||||||||||||  |||||    
T  10615654 agtaaagggaaacattctgcaataaggaacagatcactactattgaagttagcgatgtgggaacaagtgagagaggtcaaagttgtaatcttttgggaga 10615753  T
Q  204 aagctcgcaacccatgtgcaggaa 227  Q
    ||||||| ||||||| ||| ||||    
T  10615754 aagctcgtaacccatttgcgggaa 10615777  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 100 - 229
Target Start/End: Complemental strand, 10169169 - 10169040
Alignment:
Q  100 ttcaagtaaagggaaacattcggcaatgaggaacaagtcattactatagaaatcacagatgttggaacaaatgagagatgtcaaagttgtaatctttaag 199  Q
    |||||| ||||| |||||||| || || || ||||||||| || |||  ||||||   |||| ||||||| ||||||| ||||||||| |||| |||       
T  10169169 ttcaagcaaaggaaaacattctgcgataagaaacaagtcagtagtattaaaatcatcaatgtcggaacaagtgagagaggtcaaagttctaatattttga 10169070  T
Q  200 gagaaagctcgcaacccatgtgcaggaatg 229  Q
    |||||| |||||||||||| ||| ||||||    
T  10169069 gagaaaactcgcaacccatttgcgggaatg 10169040  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 100 - 229
Target Start/End: Complemental strand, 10176694 - 10176565
Alignment:
Q  100 ttcaagtaaagggaaacattcggcaatgaggaacaagtcattactatagaaatcacagatgttggaacaaatgagagatgtcaaagttgtaatctttaag 199  Q
    |||||| ||||| |||||||| || || || ||||||||| || |||  ||||||   |||| ||||||| ||||||| ||||||||| |||| |||       
T  10176694 ttcaagcaaaggaaaacattctgcgataagaaacaagtcagtagtattaaaatcatcaatgtcggaacaagtgagagaggtcaaagttctaatattttga 10176595  T
Q  200 gagaaagctcgcaacccatgtgcaggaatg 229  Q
    |||||| |||||||||||| ||| ||||||    
T  10176594 gagaaaactcgcaacccatttgcgggaatg 10176565  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 45; Significance: 2e-16; HSPs: 14)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 100 - 216
Target Start/End: Original strand, 1755490 - 1755606
Alignment:
Q  100 ttcaagtaaagggaaacattcggcaatgaggaacaagtcattactatagaaatcacagatgttggaacaaatgagagatgtcaaagttgtaatctttaag 199  Q
    |||||| ||||||||||| || ||||||||||| ||||||||  ||| || || |  ||||||||||||  ||||||| ||||||||||||||||||       
T  1755490 ttcaagcaaagggaaacagtcagcaatgaggaagaagtcattggtatggagatgagcgatgttggaacatgtgagagaggtcaaagttgtaatcttttga 1755589  T
Q  200 gagaaagctcgcaaccc 216  Q
    ||||||||| |||||||    
T  1755590 gagaaagcttgcaaccc 1755606  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 171 - 276
Target Start/End: Original strand, 553767 - 553872
Alignment:
Q  171 tgagagatgtcaaagttgtaatctttaaggagaaagctcgcaacccatgtgcaggaatgtaagtttggcgggagagattgagcgatgtgagtttcaatgg 270  Q
    ||||||| |||||||||||||| |||  |||||||||||||||||||| ||| ||||||   | ||   ||||||||| ||| |||||||| ||||||||    
T  553767 tgagagaggtcaaagttgtaatgttttgggagaaagctcgcaacccatttgcgggaatggtgggtttttgggagagatcgagtgatgtgaggttcaatgg 553866  T
Q  271 gaaaca 276  Q
     |||||    
T  553867 aaaaca 553872  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 313 - 360
Target Start/End: Complemental strand, 1524224 - 1524177
Alignment:
Q  313 gtaccacgtgaggtcgagggaggtgaggttggtgaatctttggaagag 360  Q
    |||||||||||| |||||||| |||||||||||||| |||||||||||    
T  1524224 gtaccacgtgagatcgagggaagtgaggttggtgaacctttggaagag 1524177  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 2 - 55
Target Start/End: Original strand, 532662 - 532715
Alignment:
Q  2 ttgcggagtctgaaaagtgctaacgaaagagtctctaccccatggagaaagcta 55  Q
    ||||||||| ||||||||| ||| ||||||||||| || |||||||||||||||    
T  532662 ttgcggagtttgaaaagtgataatgaaagagtctccacaccatggagaaagcta 532715  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 160 - 209
Target Start/End: Complemental strand, 3437679 - 3437630
Alignment:
Q  160 gttggaacaaatgagagatgtcaaagttgtaatctttaaggagaaagctc 209  Q
    |||||||||| ||||||| ||||||||||||||||||  |||||||||||    
T  3437679 gttggaacaactgagagaggtcaaagttgtaatcttttgggagaaagctc 3437630  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 159 - 267
Target Start/End: Original strand, 661854 - 661962
Alignment:
Q  159 tgttggaacaaatgagagatgtcaaagttgtaatctttaaggagaaagctcgcaacccatgtgcaggaatgtaagtttggcgggagagattgagcgatgt 258  Q
    ||||| ||||||||||||| || ||||||||||| | |  ||||||||||||||| ||||  || ||||||   ||||||  |||||||||||| || ||    
T  661854 tgttgtaacaaatgagagaggttaaagttgtaatatattgggagaaagctcgcaaaccattagcgggaatggtggtttggttggagagattgagtgacgt 661953  T
Q  259 gagtttcaa 267  Q
    || ||||||    
T  661954 gattttcaa 661962  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 322 - 362
Target Start/End: Complemental strand, 2373374 - 2373334
Alignment:
Q  322 gaggtcgagggaggtgaggttggtgaatctttggaagaggc 362  Q
    ||||||||||||||||||||||| ||| |||||||||||||    
T  2373374 gaggtcgagggaggtgaggttggggaacctttggaagaggc 2373334  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 161 - 229
Target Start/End: Original strand, 2547289 - 2547357
Alignment:
Q  161 ttggaacaaatgagagatgtcaaagttgtaatctttaaggagaaagctcgcaacccatgtgcaggaatg 229  Q
    ||||||||||||||||| |||||| || | ||||||   || |||||||||||||||| ||||||||||    
T  2547289 ttggaacaaatgagagacgtcaaatttttcatcttttcagacaaagctcgcaacccatttgcaggaatg 2547357  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 158 - 210
Target Start/End: Complemental strand, 55907736 - 55907684
Alignment:
Q  158 atgttggaacaaatgagagatgtcaaagttgtaatctttaaggagaaagctcg 210  Q
    ||||||||||||||||||||  ||||||||||||| |||  ||||||||||||    
T  55907736 atgttggaacaaatgagagaattcaaagttgtaatattttgggagaaagctcg 55907684  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 242 - 281
Target Start/End: Original strand, 1481722 - 1481761
Alignment:
Q  242 gagagattgagcgatgtgagtttcaatgggaaacatgaga 281  Q
    |||| |||||||||||||||||||||||||||||| ||||    
T  1481722 gagatattgagcgatgtgagtttcaatgggaaacaggaga 1481761  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 425 - 471
Target Start/End: Original strand, 548271 - 548317
Alignment:
Q  425 ttggtaatggagagtaactgtttggagacaacagaaagagacttcaa 471  Q
    ||||| |||||||| |||||||| ||||||||||| |||||||||||    
T  548271 ttggtgatggagagaaactgttttgagacaacagagagagacttcaa 548317  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 241 - 275
Target Start/End: Complemental strand, 53760271 - 53760237
Alignment:
Q  241 ggagagattgagcgatgtgagtttcaatgggaaac 275  Q
    |||||||||||| ||||||||||||||||||||||    
T  53760271 ggagagattgagtgatgtgagtttcaatgggaaac 53760237  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 163 - 212
Target Start/End: Original strand, 571330 - 571379
Alignment:
Q  163 ggaacaaatgagagatgtcaaagttgtaatctttaaggagaaagctcgca 212  Q
    ||||||| |||||||||||||||||||||| |||  |||||| |||||||    
T  571330 ggaacaattgagagatgtcaaagttgtaatattttgggagaatgctcgca 571379  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 165 - 217
Target Start/End: Complemental strand, 5106610 - 5106558
Alignment:
Q  165 aacaaatgagagatgtcaaagttgtaatctttaaggagaaagctcgcaaccca 217  Q
    ||||| ||| |||||||||| || | ||||||| |||||||||||||||||||    
T  5106610 aacaagtgatagatgtcaaatttttcatctttagggagaaagctcgcaaccca 5106558  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 44; Significance: 8e-16; HSPs: 7)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 91 - 218
Target Start/End: Original strand, 6417020 - 6417147
Alignment:
Q  91 gtcaagtatttcaagtaaagggaaacattcggcaatgaggaacaagtcattactatagaaatcacagatgttggaacaaatgagagatgtcaaagttgta 190  Q
    |||||||  |||||| |||||||||||||| ||||| |||||||  ||| |||  | ||||| |  ||||| ||||||| ||||||| ||||||||||||    
T  6417020 gtcaagttcttcaagcaaagggaaacattctgcaataaggaacagatcactaccgttgaaattaacgatgtgggaacaagtgagagaggtcaaagttgta 6417119  T
Q  191 atctttaaggagaaagctcgcaacccat 218  Q
     |||||  |||||||||||| |||||||    
T  6417120 ttcttttgggagaaagctcgtaacccat 6417147  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 158 - 227
Target Start/End: Original strand, 7132300 - 7132369
Alignment:
Q  158 atgttggaacaaatgagagatgtcaaagttgtaatctttaaggagaaagctcgcaacccatgtgcaggaa 227  Q
    ||||||||||||  |||||||| |||||||||||| |||  |||||||||||||||||||| ||||||||    
T  7132300 atgttggaacaatcgagagatgccaaagttgtaatgttttgggagaaagctcgcaacccatttgcaggaa 7132369  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 159 - 227
Target Start/End: Original strand, 7135224 - 7135292
Alignment:
Q  159 tgttggaacaaatgagagatgtcaaagttgtaatctttaaggagaaagctcgcaacccatgtgcaggaa 227  Q
    |||||||||||  |||||||| |||||||||||| |||  |||||||||||||||||||| ||||||||    
T  7135224 tgttggaacaatcgagagatgccaaagttgtaatgttttgggagaaagctcgcaacccatttgcaggaa 7135292  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 159 - 227
Target Start/End: Original strand, 7138147 - 7138215
Alignment:
Q  159 tgttggaacaaatgagagatgtcaaagttgtaatctttaaggagaaagctcgcaacccatgtgcaggaa 227  Q
    |||||||||||  |||||||| |||||||||||| |||  |||||||||||||||||||| ||||||||    
T  7138147 tgttggaacaatcgagagatgccaaagttgtaatgttttgggagaaagctcgcaacccatttgcaggaa 7138215  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 158 - 265
Target Start/End: Complemental strand, 8913481 - 8913374
Alignment:
Q  158 atgttggaacaaatgagagatgtcaaagttgtaatctttaaggagaaagctcgcaacccatgtgcaggaatgtaagtttggcgggagagattgagcgatg 257  Q
    |||||||||||| ||||||| ||||||||||||||||||   || ||| || |||||||||  ||||||| |     ||||  ||||| |||||||||||    
T  8913481 atgttggaacaattgagagaggtcaaagttgtaatctttttagataaaactagcaacccattagcaggaaaggtccattggttggagatattgagcgatg 8913382  T
Q  258 tgagtttc 265  Q
    ||||||||    
T  8913381 tgagtttc 8913374  T

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Target: chr6; HSP #6
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 100 - 146
Target Start/End: Original strand, 9412061 - 9412107
Alignment:
Q  100 ttcaagtaaagggaaacattcggcaatgaggaacaagtcattactat 146  Q
    |||||| |||||||||||||| |||||||| ||||||||||| ||||    
T  9412061 ttcaagcaaagggaaacattcagcaatgagtaacaagtcattgctat 9412107  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 165 - 218
Target Start/End: Original strand, 6423907 - 6423960
Alignment:
Q  165 aacaaatgagagatgtcaaagttgtaatctttaaggagaaagctcgcaacccat 218  Q
    ||||| ||||||| ||||||||||| || |||  ||||||||||||||||||||    
T  6423907 aacaagtgagagaggtcaaagttgttatgttttgggagaaagctcgcaacccat 6423960  T

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Target: chr5 (Bit Score: 42; Significance: 0.00000000000001; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 242 - 351
Target Start/End: Original strand, 32268614 - 32268723
Alignment:
Q  242 gagagattgagcgatgtgagtttcaatgggaaacatgagacttgagacaaaagctcgttgaggttacttatgtaccacgtgaggtcgagggaggtgaggt 341  Q
    ||||||||||| || |||||||||||||| ||||  |||| |||| | | ||||| |||||| ||||   || | |||| ||||||||||||||||||||    
T  32268614 gagagattgagtgacgtgagtttcaatggaaaacgagagatttgacagagaagcttgttgagtttaccgttgaaacacgagaggtcgagggaggtgaggt 32268713  T
Q  342 tggtgaatct 351  Q
    ||||||||||    
T  32268714 tggtgaatct 32268723  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 165 - 270
Target Start/End: Complemental strand, 41900548 - 41900443
Alignment:
Q  165 aacaaatgagagatgtcaaagttgtaatctttaaggagaaagctcgcaacccatgtgcaggaatgtaagtttggcgggagagattgagcgatgtgagttt 264  Q
    ||||| ||||||| ||||||||||||||||||  ||| |||||||| ||||||  ||| || |||    |||||   ||||| ||||| |||||||||||    
T  41900548 aacaagtgagagaggtcaaagttgtaatctttttggaaaaagctcgaaacccaaatgcggggatgacgctttggtctgagagtttgagtgatgtgagttt 41900449  T
Q  265 caatgg 270  Q
    ||||||    
T  41900448 caatgg 41900443  T

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Target: chr3 (Bit Score: 39; Significance: 0.0000000000007; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 158 - 275
Target Start/End: Complemental strand, 51763451 - 51763334
Alignment:
Q  158 atgttggaacaaatgagagatgtcaaagttgtaatctttaaggagaaagctcgcaacccatgtgcagg-aatgtaagtttggcgggagagattgagcgat 256  Q
    |||| ||||||| ||||||||||||||||||||||||||   || ||| |||||||||||| || ||| || |||||  ||   ||||||||| || |||    
T  51763451 atgtgggaacaagtgagagatgtcaaagttgtaatcttttgtgaaaaaactcgcaacccatttgtaggaaaggtaag-ctgtttggagagattaagtgat 51763353  T
Q  257 gtgagtttcaatgggaaac 275  Q
    |||||||||||||||||||    
T  51763352 gtgagtttcaatgggaaac 51763334  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 91 - 227
Target Start/End: Complemental strand, 13469777 - 13469641
Alignment:
Q  91 gtcaagtatttcaagtaaagggaaacattcggcaatgaggaacaagtcattactatagaaatcacagatgttggaacaaatgagagatgtcaaagttgta 190  Q
    |||||||  |||||| || || |||||||| ||||| ||||||| |||| | |||| ||||| |   |||| ||||||| ||||||| ||||  ||||||    
T  13469777 gtcaagttcttcaagcaacggaaaacattctgcaataaggaacaggtcactgctattgaaattagcaatgtgggaacaagtgagagaggtcagcgttgta 13469678  T
Q  191 atctttaaggagaaagctcgcaacccatgtgcaggaa 227  Q
     |||||  |||||||||||| ||||||| ||||||||    
T  13469677 ttcttttgggagaaagctcgtaacccatttgcaggaa 13469641  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 37; Significance: 0.00000000001; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 158 - 210
Target Start/End: Complemental strand, 1036672 - 1036620
Alignment:
Q  158 atgttggaacaaatgagagatgtcaaagttgtaatctttaaggagaaagctcg 210  Q
    |||||||||||||||||||| |||||||||||||| |||  ||||||||||||    
T  1036672 atgttggaacaaatgagagaagtcaaagttgtaatattttgggagaaagctcg 1036620  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 32; Significance: 0.00000001; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 88 - 274
Target Start/End: Original strand, 32151893 - 32152079
Alignment:
Q  88 gaggtcaagtatttcaagtaaagggaaacattcggcaatgaggaacaagtcattactatagaaatcacagatgttggaacaaatgagagatgtcaaagtt 187  Q
    ||||||||||  ||| || ||||||||||| ||||||||||||||||||||  | | || ||||  | | ||    |||||| ||||||| |||||||||    
T  32151893 gaggtcaagttcttcgagcaaagggaaacaatcggcaatgaggaacaagtcggtgccattgaaagaataaatacgagaacaagtgagagaggtcaaagtt 32151992  T
Q  188 gtaatctttaaggagaaagctcgcaacccatgtgcaggaat-gtaagtttggcgggagagattgagcgatgtgagtttcaatgggaaa 274  Q
    ||||| |||  |||||||||| | | |||||   |||| || |||||||| |  |||||||||||| |||||||| ||||| ||||||    
T  32151993 gtaatgttttgggagaaagcttgtatcccattcacaggtatggtaagttt-gttggagagattgagtgatgtgaggttcaacgggaaa 32152079  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 160 - 264
Target Start/End: Original strand, 14004140 - 14004244
Alignment:
Q  160 gttggaacaaatgagagatgtcaaagttgtaatctttaaggagaaagctcgcaacccatgtgcaggaatgtaagtttggcgggagagattgagcgatgtg 259  Q
    |||||||||||| || || |||||||||||||| ||    |||||||||||||| ||||  ||||||| |   | ||||  ||| |||||||||||||||    
T  14004140 gttggaacaaataagtgaggtcaaagttgtaatgttctgagagaaagctcgcaaaccattagcaggaaggatgggttggttggaaagattgagcgatgtg 14004239  T
Q  260 agttt 264  Q
    |||||    
T  14004240 agttt 14004244  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 241 - 281
Target Start/End: Complemental strand, 17642913 - 17642873
Alignment:
Q  241 ggagagattgagcgatgtgagtttcaatgggaaacatgaga 281  Q
    |||||||||||| ||||||||||||||||| ||||| ||||    
T  17642913 ggagagattgagtgatgtgagtttcaatggaaaacaagaga 17642873  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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