View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF11888_low_14 (Length: 488)
Name: NF11888_low_14
Description: NF11888
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11888_low_14 |
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Alignment Details
Target: chr7 (Bit Score: 397; Significance: 0; HSPs: 12)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 397; E-Value: 0
Query Start/End: Original strand, 20 - 476
Target Start/End: Original strand, 29900402 - 29900861
Alignment:
| Q |
20 |
cagagagctgatgcatcaactcggggttgccactgttactcatatcagaaggaaactgaactctgatgtcacaacgttgtggactagagttgtcgtttct |
119 |
Q |
| |
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|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |||||||||||||| |
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| T |
29900402 |
cagagagctgatgcatcaactcggggatgccactgttactcatatcagaaggaaactgaactctgatgtcacaaccttgtggacttgagttgtcgtttct |
29900501 |
T |
|
| Q |
120 |
acnnnnnnnnta-tattcaagaactctctctatccaagtgcactttttctgtatttaattttccccttcttttggttctaggcatatttccaagtttcaa |
218 |
Q |
| |
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|| | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
29900502 |
acaaaaaaaaaaatattcaagaactctctctatccaagtgcactttttctgtatttaattttccccttcttttggttctaggcatatttccaagtttcaa |
29900601 |
T |
|
| Q |
219 |
ccagtttagcatttcttttcagccattttgtcagcgtcaatttctatgacaatttcaaaac--tttgtcggtgtttatgctttttagggtatgtttgact |
316 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |
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| T |
29900602 |
ccagtttagcatttcttttcagccattttgtcagcgtcaatttctatgacaatttcaaaacgttttgtcggtgtttatgctttttagggtatgtttgact |
29900701 |
T |
|
| Q |
317 |
atgttatccaatttataatctatactatgaaccatgttattaaagcttgactgtaatgaatctatccaattattaacctatgttgatgcattacacaatg |
416 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
29900702 |
atgttatccaatttataatctatactatgaaccatgttattaaagcttgactgtaatgaatctatccaattattaacctatgttgatgcattacacaatg |
29900801 |
T |
|
| Q |
417 |
tcacgtgaaaaccatgttattaaagcttgattgtaatgaatctatcaaattattaaccta |
476 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |
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|
| T |
29900802 |
tcacgtgaaaaccatgttattaaagcttgattgtaatgaatctaacaaattattaaccta |
29900861 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 273; E-Value: 1e-152
Query Start/End: Original strand, 130 - 427
Target Start/End: Original strand, 29886307 - 29886606
Alignment:
| Q |
130 |
tatattcaagaactctctctatccaagtgcactttttctgtatttaattttccccttcttttggttctaggcatatttccaa--gtttcaaccagtttag |
227 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |||||||||||||||| |
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|
| T |
29886307 |
tatattcaagaactctctctatccaagtgcactttttctgtatttaattttccccttcttttggttcttggcatatttccaaaagtttcaaccagtttag |
29886406 |
T |
|
| Q |
228 |
catttcttttcagccattttgtcagcgtcaatttctatgacaatttcaaaactttgtcggtgtttatgctttttagggtatgtttgactatgttatccaa |
327 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| ||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
29886407 |
catttcttttcagccattttgtcagcgtcaatttctatgacaatttcaaaactatgtcagtgtttatgctttttagggtatgtttgactatgttatccaa |
29886506 |
T |
|
| Q |
328 |
tttataatctatactatgaaccatgttattaaagcttgactgtaatgaatctatccaattattaacctatgttgatgcattacacaatgtcacgtgaaaa |
427 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |
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|
| T |
29886507 |
tttataatctatactatgaaccatgttattaaagcttgactgtaatgaatctatccaattattaacctatgttgatgcattacacaatgtcacatgaaaa |
29886606 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 244 - 415
Target Start/End: Original strand, 29896908 - 29897081
Alignment:
| Q |
244 |
ttttgtcagcgtcaatttctatgacaatttcaaaactttgtcggtgtttatgctttttagggt--atgtttgactatgttatccaatttataatctatac |
341 |
Q |
| |
|
|||||| ||| || ||||||||||||||||||||||| ||| |||||||||| ||| ||||| |||||||| |||||||||||||| |||||||||| |
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|
| T |
29896908 |
ttttgtgagcatctatttctatgacaatttcaaaactatgttggtgtttatgaatttaagggtttatgtttgattatgttatccaattactaatctatac |
29897007 |
T |
|
| Q |
342 |
tatgaaccatgttattaaagcttgactgtaatgaatctatccaattattaacctatgttgatgcattacacaat |
415 |
Q |
| |
|
||| ||||||||||| ||| ||||| || || || |||| | ||||||||||| | |||||| ||||| |||| |
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|
| T |
29897008 |
tataaaccatgttatgaaatcttgatcgttattaacctattctattattaacctctattgatgtattactcaat |
29897081 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 346 - 427
Target Start/End: Original strand, 29900811 - 29900892
Alignment:
| Q |
346 |
aaccatgttattaaagcttgactgtaatgaatctatccaattattaacctatgttgatgcattacacaatgtcacgtgaaaa |
427 |
Q |
| |
|
||||||||||||||||||||| ||||||||||||| | ||||||||||||| | |||||||||||||||||||||||||||| |
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|
| T |
29900811 |
aaccatgttattaaagcttgattgtaatgaatctaacaaattattaacctacgctgatgcattacacaatgtcacgtgaaaa |
29900892 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 61; E-Value: 5e-26
Query Start/End: Original strand, 244 - 409
Target Start/End: Original strand, 29904512 - 29904678
Alignment:
| Q |
244 |
ttttgtcagcgtcaatttctatgacaatttcaaaactttgtcggtgtttatgctttttagggt--atgtttgactatgttatccaatttataatctatac |
341 |
Q |
| |
|
|||||| ||| || |||||||||||||||| |||||| ||| ||||| ||||| ||| ||||| |||||||| |||||||||||||| |||||| || |
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|
| T |
29904512 |
ttttgtgagcatctatttctatgacaattttaaaactatgttggtgtgtatgcatttaagggtttatgtttgattatgttatccaattacgaatctaaac |
29904611 |
T |
|
| Q |
342 |
tatgaaccatgttattaaagcttgactgtaatgaatctatccaattattaacctatgttgatgcatta |
409 |
Q |
| |
|
||| |||||| |||||||||| ||| ||| ||| | |||||||||||||||||| |||||||||||| |
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|
| T |
29904612 |
tataaaccatattattaaagcatgattgtcatg-acctatccaattattaacctcagttgatgcatta |
29904678 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #6
Raw Score: 59; E-Value: 8e-25
Query Start/End: Original strand, 258 - 409
Target Start/End: Original strand, 29888190 - 29888343
Alignment:
| Q |
258 |
atttctatgacaatttcaaaactttgtcggtgtttatgctttttagggt--atgtttgactatgttatccaatttataatctatactatgaaccatgtta |
355 |
Q |
| |
|
|||||||||| ||||| |||||| ||| ||||||||||| | | ||||| ||| |||| ||||||| |||||| |||||||| |||| ||||||| || |
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|
| T |
29888190 |
atttctatgataattttaaaactatgttggtgtttatgcatgtaagggtttatgattgattatgttacccaattactaatctattctataaaccatgcta |
29888289 |
T |
|
| Q |
356 |
ttaaagcttgactgtaatgaatctatccaattattaacctatgttgatgcatta |
409 |
Q |
| |
|
|||||| |||| ||| || || |||||||||||||||||| ||||||||||||| |
|
|
| T |
29888290 |
ttaaagtttgattgtcatcaacctatccaattattaacctctgttgatgcatta |
29888343 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #7
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 20 - 121
Target Start/End: Original strand, 29886179 - 29886281
Alignment:
| Q |
20 |
cagagagctgatgcatcaactcggggt-tgccactgttactcatatcagaaggaaactgaactctgatgtcacaacgttgtggactagagttgtcgtttc |
118 |
Q |
| |
|
|||||||||||| ||||||| |||| |||| |||||||||||||||||||||| || |||| |||| ||||||| ||||||||| |||||||| |||| |
|
|
| T |
29886179 |
cagagagctgatacatcaaccgggggggtgcccctgttactcatatcagaaggaagctaaactatgatctcacaaccttgtggacttgagttgtcatttc |
29886278 |
T |
|
| Q |
119 |
tac |
121 |
Q |
| |
|
||| |
|
|
| T |
29886279 |
tac |
29886281 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #8
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 426 - 478
Target Start/End: Original strand, 29886525 - 29886577
Alignment:
| Q |
426 |
aaccatgttattaaagcttgattgtaatgaatctatcaaattattaacctatg |
478 |
Q |
| |
|
||||||||||||||||||||| ||||||||||||||| ||||||||||||||| |
|
|
| T |
29886525 |
aaccatgttattaaagcttgactgtaatgaatctatccaattattaacctatg |
29886577 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #9
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 426 - 478
Target Start/End: Original strand, 29900731 - 29900783
Alignment:
| Q |
426 |
aaccatgttattaaagcttgattgtaatgaatctatcaaattattaacctatg |
478 |
Q |
| |
|
||||||||||||||||||||| ||||||||||||||| ||||||||||||||| |
|
|
| T |
29900731 |
aaccatgttattaaagcttgactgtaatgaatctatccaattattaacctatg |
29900783 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #10
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 202 - 415
Target Start/End: Original strand, 29857095 - 29857317
Alignment:
| Q |
202 |
atatttccaagtttcaaccagtttagcatttcttttcagccatttt-gtcagcgtcaatttctatgacaatttcaaaactttgtcggtgtttatgctttt |
300 |
Q |
| |
|
|||||||||||||||| |||||||||||| ||||||||| |||||| || || | |||||||||||||||||| |||| ||| | || |||||| ||| |
|
|
| T |
29857095 |
atatttccaagtttcagccagtttagcatctcttttcagtcattttcctcggcattgatttctatgacaatttcataactatgttgttggttatgcattt |
29857194 |
T |
|
| Q |
301 |
tagg--gtatgtttgactat---gttatccaatt--ta-taatctatactatgaaccatgttattaaagcttgactgtaatgaatctatccaattattaa |
392 |
Q |
| |
|
||| ||||||||| | | |||||||||| || || |||||||||| |||||| ||| ||||| || | | | || |||||||||||||||| |
|
|
| T |
29857195 |
aaggatttatgtttgaatgtatatttatccaattactagtagtctatactataaaccattttaataaagatttattatcattggtctatccaattattaa |
29857294 |
T |
|
| Q |
393 |
cctatgttgatgcattacacaat |
415 |
Q |
| |
|
|| ||||||||||||||||||| |
|
|
| T |
29857295 |
gctttgttgatgcattacacaat |
29857317 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #11
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 258 - 411
Target Start/End: Original strand, 29075504 - 29075654
Alignment:
| Q |
258 |
atttctatgacaatttcaaaactttgtcggtgtttatgctttttagggt--atgtttgactatgttatccaatttataatctatactatgaaccatgtta |
355 |
Q |
| |
|
|||||||||||||||||| | ||||||||||||||| ||| ||||| ||| |||||||| || ||||||| ||||||||| |||||| ||| |
|
|
| T |
29075504 |
atttctatgacaatttcatagtcgtgtcggtgtttatgcatttaagggtttatgattgactatattgtccaattactaatctata-----aaccatttta |
29075598 |
T |
|
| Q |
356 |
ttaaagcttgactgtaatgaatctatccaattattaacctatgttgatgcattaca |
411 |
Q |
| |
|
||||| ||||| | | || | |||| |||||||||| || ||||||||||||||| |
|
|
| T |
29075599 |
ttaaatcttgattatcattgacctattcaattattaagctttgttgatgcattaca |
29075654 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #12
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 258 - 411
Target Start/End: Original strand, 29108666 - 29108816
Alignment:
| Q |
258 |
atttctatgacaatttcaaaactttgtcggtgtttatgctttttagggtatgt--ttgactatgttatccaatttataatctatactatgaaccatgtta |
355 |
Q |
| |
|
|||||||||||||||||| | ||||||||||||||| ||| ||||| ||| |||||||| || ||||||| ||||||||| |||||| ||| |
|
|
| T |
29108666 |
atttctatgacaatttcatagtcgtgtcggtgtttatgcatttaagggtttgtgattgactatattgtccaattagtaatctata-----aaccatttta |
29108760 |
T |
|
| Q |
356 |
ttaaagcttgactgtaatgaatctatccaattattaacctatgttgatgcattaca |
411 |
Q |
| |
|
||||| ||||| | | || | |||| |||||||||| || ||||||||||||||| |
|
|
| T |
29108761 |
ttaaatcttgattatcattgacctattcaattattaagctttgttgatgcattaca |
29108816 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 44; Significance: 8e-16; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 42 - 246
Target Start/End: Complemental strand, 4366018 - 4365804
Alignment:
| Q |
42 |
ggggttgccactgttactcatatcagaaggaaactgaactctgatgt-cacaacgttgtggactagagttgtcgtttctacnnnnnnnntatattcaaga |
140 |
Q |
| |
|
|||| ||||||| | |||||||| |||||||| |||||||||||||| |||||| ||||||||| ||||| || ||||||| | |||||||| |
|
|
| T |
4366018 |
ggggatgccactatcactcatataagaaggaatctgaactctgatgtacacaaccttgtggacttgagttttcatttctacaaaaaaac-agattcaaga |
4365920 |
T |
|
| Q |
141 |
actctctctatccaagtgcac---tttttctgtatttaattttccccttcttttggttctaggc-------atatttccaagtttcaaccagtttagcat |
230 |
Q |
| |
|
||| ||||| ||||||||||| |||||||| |||| ||||||||| |||||||||| | | ||| ||| |||||||||||| |||||||| |
|
|
| T |
4365919 |
actttctctgtccaagtgcacttttttttctgaattttgttttcccctaattttggttctggtcaccaaagatacttctaagtttcaaccattttagcat |
4365820 |
T |
|
| Q |
231 |
ttcttttcagccattt |
246 |
Q |
| |
|
||||||||||||||| |
|
|
| T |
4365819 |
ctcttttcagccattt |
4365804 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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