View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11888_low_16 (Length: 434)
Name: NF11888_low_16
Description: NF11888
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11888_low_16 |
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Alignment Details
Target: chr5 (Bit Score: 393; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 393; E-Value: 0
Query Start/End: Original strand, 18 - 410
Target Start/End: Complemental strand, 2821545 - 2821153
Alignment:
| Q |
18 |
cagagaaatggtggaaaaggcaaagaaaacggcgcattttaggttggtggtaaaaaatggaaaagggtatttagagaaatacaagaacaaagaagctata |
117 |
Q |
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| T |
2821545 |
cagagaaatggtggaaaaggcaaagaaaacggcgcattttaggttggtggtaaaaaatggaaaagggtatttagagaaatacaagaacaaagaagctata |
2821446 |
T |
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| Q |
118 |
caaacacgtgatgttttcaccgtttggggtattctgcaattactgagaaagtaccctggtaaaattccagacttggaactcatgtttgattgcaatgata |
217 |
Q |
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| T |
2821445 |
caaacacgtgatgttttcaccgtttggggtattctgcaattactgagaaagtaccctggtaaaattccagacttggaactcatgtttgattgcaatgata |
2821346 |
T |
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| Q |
218 |
agcctgttgtgcccattggcttggacccaccacctgtttttggttactgtgctgatcggtggacacaagatattgttttccctgactggtccttctgggg |
317 |
Q |
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| T |
2821345 |
agcctgttgtgcccattggcttggacccaccacctgtttttggttactgtgctgatcggtggacacaagatattgttttccctgactggtccttctgggg |
2821246 |
T |
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| Q |
318 |
ttggtatgttcctaacacattctacttgttttaataattctcgtgaagcatgcttggccccatttttatttttatgttaatttggatccatat |
410 |
Q |
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| T |
2821245 |
ttggtatgttcctaacacattctacttgttttaataattctcgtgaagcatgcttggccccatttttatttttatgttaatttggatccatat |
2821153 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 142 - 227
Target Start/End: Original strand, 11808810 - 11808895
Alignment:
| Q |
142 |
tggggtattctgcaattactgagaaagtaccctggtaaaattccagacttggaactcatgtttgattgcaatgataagcctgttgt |
227 |
Q |
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| T |
11808810 |
tggggtattttgcaattattgagattgtaccctggcaagttgcctgatttggaacttatgtttgattgtgaagataagcctgttgt |
11808895 |
T |
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