View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF11888_low_17 (Length: 431)

Name: NF11888_low_17
Description: NF11888
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF11888_low_17
NF11888_low_17
[»] chr3 (7 HSPs)
chr3 (16-318)||(54753683-54754005)
chr3 (113-318)||(29516159-29516368)
chr3 (113-315)||(53345214-53345414)
chr3 (16-114)||(53346340-53346438)
chr3 (16-114)||(29516396-29516491)
chr3 (384-421)||(54754070-54754107)
chr3 (384-421)||(53345099-53345136)
[»] scaffold0928 (2 HSPs)
scaffold0928 (113-318)||(2746-2955)
scaffold0928 (384-421)||(3020-3057)
[»] chr6 (3 HSPs)
chr6 (113-318)||(5312473-5312682)
chr6 (16-114)||(5312347-5312445)
chr6 (384-421)||(5312747-5312784)
[»] chr7 (3 HSPs)
chr7 (113-318)||(9147469-9147678)
chr7 (16-114)||(9147706-9147804)
chr7 (384-421)||(9147364-9147401)
[»] chr2 (3 HSPs)
chr2 (117-213)||(23457735-23457828)
chr2 (211-313)||(23455123-23455230)
chr2 (16-114)||(23457860-23457962)
[»] chr4 (1 HSPs)
chr4 (113-159)||(35425198-35425245)


Alignment Details
Target: chr3 (Bit Score: 236; Significance: 1e-130; HSPs: 7)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 236; E-Value: 1e-130
Query Start/End: Original strand, 16 - 318
Target Start/End: Original strand, 54753683 - 54754005
Alignment:
Q  16 aatatgtgttcatttccatacacaatcctctgatcatcttctttgtctgatttttt-ctccaacaaaaatcaaaacaagatggttgcctgtacaaaataa 114  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| ||||||||||||    
T  54753683 aatatgtgttcatttccatacacaatcctctgatcatcttctttgtctgatttttttctccaacaaaaatcaaaacaagatggttgcttgtacaaaataa 54753782  T
Q  115 ---------------actacaagccatggtagattattttaaccaaagacacactccaacgcccaacataggcttcaagatttaa----aggcacaacta 195  Q
                   ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    |||||||||||    
T  54753783 tgtttgatgcatcaaactacaagccatggtagattattttaaccaaagacacactccaacgcccaacataggcttcaagatttaattaaaggcacaacta 54753882  T
Q  196 aaatatggaattaaatatcttctggaaatctgttgtaccactattttgttacatctctctttgattgggacatgagatgacagttactaccatggagaag 295  Q
    ||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||    
T  54753883 aaatatggaattacatatcttctggaaatctgttgtaccactattttgttacatctctctttgattgggacatgaggtgacagttactaccatggagaag 54753982  T
Q  296 ataacaaaagcatttccctcctt 318  Q
    |||||||||||||||||||||||    
T  54753983 ataacaaaagcatttccctcctt 54754005  T

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Target: chr3; HSP #2
Raw Score: 161; E-Value: 1e-85
Query Start/End: Original strand, 113 - 318
Target Start/End: Complemental strand, 29516368 - 29516159
Alignment:
Q  113 aaactacaagccatggtagattattttaaccaaagacacactccaacgcccaacataggcttcaagatttaa----aggcacaactaaaatatggaatta 208  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    |||||||||||||||||| |||||    
T  29516368 aaactacaagccatggtagattattttaaccaaagacacactccaacgcccaacataggcttcaagatttaattaaaggcacaactaaaatatgaaatta 29516269  T
Q  209 aatatcttctggaaatctgttgtaccactattttgttacatctctctttgattgggacatgagatgacagttactaccatggagaagataacaaaagcat 308  Q
     ||| |||||| |||||| |||||||||||||||||||||||||||  ||||||||||||||| ||||||||||||||||||||||||||||||||||||    
T  29516268 cataccttctgaaaatcttttgtaccactattttgttacatctctccatgattgggacatgaggtgacagttactaccatggagaagataacaaaagcat 29516169  T
Q  309 ttccctcctt 318  Q
    ||||||||||    
T  29516168 ttccctcctt 29516159  T

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Target: chr3; HSP #3
Raw Score: 147; E-Value: 2e-77
Query Start/End: Original strand, 113 - 315
Target Start/End: Complemental strand, 53345414 - 53345214
Alignment:
Q  113 aaactacaagccatggtagattattttaaccaaagacacactccaacgcccaacataggcttcaagat----ttaaaggcacaactaaaatatggaatta 208  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    ||||||||||||||||||||||||||||    
T  53345414 aaactacaagccatggtagattattttaaccaaagacacactccaacgcccaacataggcttcaagatttaattaaaggcacaactaaaatatggaatta 53345315  T
Q  209 aatatcttctggaaatctgttgtaccactattttgttacatctctctttgattgggacatgagatgacagttactaccatggagaagataacaaaagcat 308  Q
     ||||||||      | |||| ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| ||||    
T  53345314 catatcttc------tttgttataccactattttgttacatctctctttgattgggacatgaggtgacagttactaccatggagaagataacaaaggcat 53345221  T
Q  309 ttccctc 315  Q
    |||||||    
T  53345220 ttccctc 53345214  T

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Target: chr3; HSP #4
Raw Score: 91; E-Value: 6e-44
Query Start/End: Original strand, 16 - 114
Target Start/End: Complemental strand, 53346438 - 53346340
Alignment:
Q  16 aatatgtgttcatttccatacacaatcctctgatcatcttctttgtctgattttttctccaacaaaaatcaaaacaagatggttgcctgtacaaaataa 114  Q
    ||||||||||||||||||||||||||||||| ||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||    
T  53346438 aatatgtgttcatttccatacacaatcctcttatcatcttctttgtctggttttttctccaacaaaaatcaaaacaagatggttgcctgtacaaaataa 53346340  T

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Target: chr3; HSP #5
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 16 - 114
Target Start/End: Complemental strand, 29516491 - 29516396
Alignment:
Q  16 aatatgtgttcatttccatacacaatcctctgatcatcttctttgtctgattttttctccaacaaaaatcaaaacaagatggttgcctgtacaaaataa 114  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||  ||||||||||||||||||||||   ||||||||||||||||||||||||    
T  29516491 aatatgtgttcatttccatacacaatcctctgatcatcttctttgtctagttttttctccaacaaaaatcaa---aagatggttgcctgtacaaaataa 29516396  T

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Target: chr3; HSP #6
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 384 - 421
Target Start/End: Original strand, 54754070 - 54754107
Alignment:
Q  384 tagaatagttcttcgaaaaattcattcatcaatctctg 421  Q
    ||||||||||||||||||||||||||||||||||||||    
T  54754070 tagaatagttcttcgaaaaattcattcatcaatctctg 54754107  T

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Target: chr3; HSP #7
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 384 - 421
Target Start/End: Complemental strand, 53345136 - 53345099
Alignment:
Q  384 tagaatagttcttcgaaaaattcattcatcaatctctg 421  Q
    |||||||||||| |||||||||||||||||||||||||    
T  53345136 tagaatagttctccgaaaaattcattcatcaatctctg 53345099  T

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Target: scaffold0928 (Bit Score: 185; Significance: 1e-100; HSPs: 2)
Name: scaffold0928
Description:

Target: scaffold0928; HSP #1
Raw Score: 185; E-Value: 1e-100
Query Start/End: Original strand, 113 - 318
Target Start/End: Original strand, 2746 - 2955
Alignment:
Q  113 aaactacaagccatggtagattattttaaccaaagacacactccaacgcccaacataggcttcaagatttaa----aggcacaactaaaatatggaatta 208  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    ||||||||||||||||||||||||    
T  2746 aaactacaagccatggtagattattttaaccaaagacacactccaacgcccaacataggcttcaagatttaattaaaggcacaactaaaatatggaatta 2845  T
Q  209 aatatcttctggaaatctgttgtaccactattttgttacatctctctttgattgggacatgagatgacagttactaccatggagaagataacaaaagcat 308  Q
     |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||    
T  2846 catatcttctggaaatctgttgtaccactattttgttacatctctctttgattgggacatgaggtgacagttactaccatggagaagataacaaaagcat 2945  T
Q  309 ttccctcctt 318  Q
    ||||||||||    
T  2946 ttccctcctt 2955  T

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Target: scaffold0928; HSP #2
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 384 - 421
Target Start/End: Original strand, 3020 - 3057
Alignment:
Q  384 tagaatagttcttcgaaaaattcattcatcaatctctg 421  Q
    ||||||||||||||||||||||||||||||||||||||    
T  3020 tagaatagttcttcgaaaaattcattcatcaatctctg 3057  T

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Target: chr6 (Bit Score: 185; Significance: 1e-100; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 185; E-Value: 1e-100
Query Start/End: Original strand, 113 - 318
Target Start/End: Original strand, 5312473 - 5312682
Alignment:
Q  113 aaactacaagccatggtagattattttaaccaaagacacactccaacgcccaacataggcttcaagatttaa----aggcacaactaaaatatggaatta 208  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    ||||||||||||||||||||||||    
T  5312473 aaactacaagccatggtagattattttaaccaaagacacactccaacgcccaacataggcttcaagatttaattaaaggcacaactaaaatatggaatta 5312572  T
Q  209 aatatcttctggaaatctgttgtaccactattttgttacatctctctttgattgggacatgagatgacagttactaccatggagaagataacaaaagcat 308  Q
     |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||    
T  5312573 catatcttctggaaatctgttgtaccactattttgttacatctctctttgattgggacatgaggtgacagttactaccatggagaagataacaaaagcat 5312672  T
Q  309 ttccctcctt 318  Q
    ||||||||||    
T  5312673 ttccctcctt 5312682  T

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Target: chr6; HSP #2
Raw Score: 95; E-Value: 2e-46
Query Start/End: Original strand, 16 - 114
Target Start/End: Original strand, 5312347 - 5312445
Alignment:
Q  16 aatatgtgttcatttccatacacaatcctctgatcatcttctttgtctgattttttctccaacaaaaatcaaaacaagatggttgcctgtacaaaataa 114  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||    
T  5312347 aatatgtgttcatttccatacacaatcctctgatcatcttctttgtctgattttttctccaacaaaaatcaaaacaagatggttgcctgtaaaaaataa 5312445  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 384 - 421
Target Start/End: Original strand, 5312747 - 5312784
Alignment:
Q  384 tagaatagttcttcgaaaaattcattcatcaatctctg 421  Q
    ||||||||||||||||||||||||||||||||||||||    
T  5312747 tagaatagttcttcgaaaaattcattcatcaatctctg 5312784  T

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Target: chr7 (Bit Score: 177; Significance: 3e-95; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 177; E-Value: 3e-95
Query Start/End: Original strand, 113 - 318
Target Start/End: Complemental strand, 9147678 - 9147469
Alignment:
Q  113 aaactacaagccatggtagattattttaaccaaagacacactccaacgcccaacataggcttcaagattt----aaaggcacaactaaaatatggaatta 208  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    ||||||||||||||||||||||||||    
T  9147678 aaactacaagccatggtagattattttaaccaaagacacactccaacgcccaacataggcttcaagatttgattaaaggcacaactaaaatatggaatta 9147579  T
Q  209 aatatcttctggaaatctgttgtaccactattttgttacatctctctttgattgggacatgagatgacagttactaccatggagaagataacaaaagcat 308  Q
     |||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |||||||||||||||||||    
T  9147578 catatcttctggaaatctggtgtaccactattttgttacatctctctttgattgggacatgaggtgacagttactaccatcgagaagataacaaaagcat 9147479  T
Q  309 ttccctcctt 318  Q
    ||||||||||    
T  9147478 ttccctcctt 9147469  T

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Target: chr7; HSP #2
Raw Score: 87; E-Value: 1e-41
Query Start/End: Original strand, 16 - 114
Target Start/End: Complemental strand, 9147804 - 9147706
Alignment:
Q  16 aatatgtgttcatttccatacacaatcctctgatcatcttctttgtctgattttttctccaacaaaaatcaaaacaagatggttgcctgtacaaaataa 114  Q
    |||||||||||||||||||||||||||||||||||||||||||||| || ||||||||||||||||||||||||||||||||||||||||| |||||||    
T  9147804 aatatgtgttcatttccatacacaatcctctgatcatcttctttgtttggttttttctccaacaaaaatcaaaacaagatggttgcctgtaaaaaataa 9147706  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 384 - 421
Target Start/End: Complemental strand, 9147401 - 9147364
Alignment:
Q  384 tagaatagttcttcgaaaaattcattcatcaatctctg 421  Q
    ||||||||||||||||||||||||||||||||||||||    
T  9147401 tagaatagttcttcgaaaaattcattcatcaatctctg 9147364  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 42; Significance: 0.00000000000001; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 117 - 213
Target Start/End: Complemental strand, 23457828 - 23457735
Alignment:
Q  117 tacaagccatggtagattattttaaccaaagacacactccaacgcccaacataggcttcaagat----ttaaaggcacaactaaaatatggaattaaata 212  Q
    ||||||||||| |||||||||||||||||||||||||||       ||||||||||||||||||    |||||||||| | ||||||||||||||| |||    
T  23457828 tacaagccatgatagattattttaaccaaagacacactc-------caacataggcttcaagatttaattaaaggcactattaaaatatggaattatata 23457736  T

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Target: chr2; HSP #2
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 211 - 313
Target Start/End: Complemental strand, 23455230 - 23455123
Alignment:
Q  211 tatcttctggaaatctgttgtaccactattttgttacatctctctttgattgggac-----atgagatgacagttactaccatggagaagataacaaaag 305  Q
    ||||||||||| ||| || |||||||||||| ||| |||||||||||| |||||||      |||| |||  ||||||||| ||||||||||||||||||    
T  23455230 tatcttctggatatccgtcgtaccactatttcgttgcatctctctttggttgggacttgagttgaggtgatggttactaccttggagaagataacaaaag 23455131  T
Q  306 catttccc 313  Q
    | ||||||    
T  23455130 cctttccc 23455123  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 16 - 114
Target Start/End: Complemental strand, 23457962 - 23457860
Alignment:
Q  16 aatatgtgttcatttccatacacaatcctctgatcatcttctttgtctgattttttctc-----caacaaaaatcaaaacaagatggttgcctgtacaaa 110  Q
    |||| |||||||||| || |||||||||| || | |||||||| ||||| |||||||||     ||||||||||| ||||||||||||| ||  ||||||    
T  23457962 aatacgtgttcattttcacacacaatcctatgtt-atcttcttcgtctgtttttttctcaaactcaacaaaaatccaaacaagatggtttccattacaaa 23457864  T
Q  111 ataa 114  Q
    ||||    
T  23457863 ataa 23457860  T

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Target: chr4 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 113 - 159
Target Start/End: Original strand, 35425198 - 35425245
Alignment:
Q  113 aaactacaagccatggtagatta-ttttaaccaaagacacactccaac 159  Q
    ||||||||||||||| ||||||| |||||| |||||||||||||||||    
T  35425198 aaactacaagccatgatagattatttttaagcaaagacacactccaac 35425245  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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