View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF11888_low_18 (Length: 415)

Name: NF11888_low_18
Description: NF11888
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF11888_low_18
NF11888_low_18
[»] chr4 (3 HSPs)
chr4 (221-399)||(16943493-16943672)
chr4 (25-89)||(16942013-16942077)
chr4 (95-138)||(16943359-16943402)
[»] chr8 (2 HSPs)
chr8 (25-79)||(43444581-43444635)
chr8 (25-71)||(18014217-18014263)
[»] chr7 (4 HSPs)
chr7 (25-79)||(8989008-8989062)
chr7 (25-79)||(43585893-43585947)
chr7 (26-79)||(35966832-35966885)
chr7 (26-79)||(35988244-35988297)
[»] chr6 (1 HSPs)
chr6 (25-79)||(26257031-26257085)


Alignment Details
Target: chr4 (Bit Score: 144; Significance: 1e-75; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 144; E-Value: 1e-75
Query Start/End: Original strand, 221 - 399
Target Start/End: Original strand, 16943493 - 16943672
Alignment:
Q  221 atctttatggatagcaaaattctcatttaagatatttaacactactacattctcataatctttgcttagaccgaaaagaacctttattattt-aatccaa 319  Q
    |||||||||||||| |||| |||||||||| ||||||||||||||||| |||||||||||||||||||||  |||||||||||||||||||| |||||||    
T  16943493 atctttatggatagtaaaactctcatttaatatatttaacactactacgttctcataatctttgcttagattgaaaagaacctttattattttaatccaa 16943592  T
Q  320 gtgcttttgagttgcatttgactatttcttatatatattgaaaaataatataaataacacaatgattatatttttctttc 399  Q
    || |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  16943593 gtacttttgagttgcatttgactatttcttatatatattgaaaaataatataaataacacaatgattatatttttctttc 16943672  T

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Target: chr4; HSP #2
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 25 - 89
Target Start/End: Original strand, 16942013 - 16942077
Alignment:
Q  25 agatcttggtcttatgacctactttcttggcattgaaatcaaacaaaatgaaaattgtgtgttca 89  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  16942013 agatcttggtcttatgacctactttcttggcattgaaatcaaacaaaatgaaaattgtgtgttca 16942077  T

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Target: chr4; HSP #3
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 95 - 138
Target Start/End: Original strand, 16943359 - 16943402
Alignment:
Q  95 aatgagatgatatttcctccgctcaaaataaatttagcatttga 138  Q
    ||||||||||||||||||||||||||||||||| ||||||||||    
T  16943359 aatgagatgatatttcctccgctcaaaataaatgtagcatttga 16943402  T

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Target: chr8 (Bit Score: 43; Significance: 0.000000000000003; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 25 - 79
Target Start/End: Original strand, 43444581 - 43444635
Alignment:
Q  25 agatcttggtcttatgacctactttcttggcattgaaatcaaacaaaatgaaaat 79  Q
    |||||||||||||||||| ||||||||||| ||||||||||| ||||||||||||    
T  43444581 agatcttggtcttatgacttactttcttggtattgaaatcaagcaaaatgaaaat 43444635  T

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Target: chr8; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 25 - 71
Target Start/End: Original strand, 18014217 - 18014263
Alignment:
Q  25 agatcttggtcttatgacctactttcttggcattgaaatcaaacaaa 71  Q
    |||||||||||||||||| || |||||||| ||||| ||||||||||    
T  18014217 agatcttggtcttatgacatattttcttggaattgagatcaaacaaa 18014263  T

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Target: chr7 (Bit Score: 43; Significance: 0.000000000000003; HSPs: 4)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 25 - 79
Target Start/End: Original strand, 8989008 - 8989062
Alignment:
Q  25 agatcttggtcttatgacctactttcttggcattgaaatcaaacaaaatgaaaat 79  Q
    |||||||||||||||||| ||||||||||| ||||||||||| ||||||||||||    
T  8989008 agatcttggtcttatgacttactttcttggtattgaaatcaagcaaaatgaaaat 8989062  T

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Target: chr7; HSP #2
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 25 - 79
Target Start/End: Original strand, 43585893 - 43585947
Alignment:
Q  25 agatcttggtcttatgacctactttcttggcattgaaatcaaacaaaatgaaaat 79  Q
    |||||||||||||||||| ||||||||||| ||||||||||| ||||||||||||    
T  43585893 agatcttggtcttatgacttactttcttggtattgaaatcaagcaaaatgaaaat 43585947  T

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Target: chr7; HSP #3
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 26 - 79
Target Start/End: Complemental strand, 35966885 - 35966832
Alignment:
Q  26 gatcttggtcttatgacctactttcttggcattgaaatcaaacaaaatgaaaat 79  Q
    ||||||||||||||||| |||||||||||  |||||||||| ||||||||||||    
T  35966885 gatcttggtcttatgacttactttcttggtgttgaaatcaagcaaaatgaaaat 35966832  T

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Target: chr7; HSP #4
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 26 - 79
Target Start/End: Complemental strand, 35988297 - 35988244
Alignment:
Q  26 gatcttggtcttatgacctactttcttggcattgaaatcaaacaaaatgaaaat 79  Q
    ||||||||||||||||| |||||||||||  |||||||||| ||||||||||||    
T  35988297 gatcttggtcttatgacttactttcttggtgttgaaatcaagcaaaatgaaaat 35988244  T

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Target: chr6 (Bit Score: 43; Significance: 0.000000000000003; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 25 - 79
Target Start/End: Original strand, 26257031 - 26257085
Alignment:
Q  25 agatcttggtcttatgacctactttcttggcattgaaatcaaacaaaatgaaaat 79  Q
    |||||||||||||||||| ||||||||||| ||||||||||| ||||||||||||    
T  26257031 agatcttggtcttatgacttactttcttggtattgaaatcaagcaaaatgaaaat 26257085  T

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