View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11888_low_19 (Length: 408)
Name: NF11888_low_19
Description: NF11888
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11888_low_19 |
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Alignment Details
Target: chr5 (Bit Score: 362; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 362; E-Value: 0
Query Start/End: Original strand, 12 - 393
Target Start/End: Original strand, 28212370 - 28212751
Alignment:
| Q |
12 |
gagatgaaaattatgagatacgattatcacataccgctcgaatgttccggttgttcctgtacttccatattcactccaaacgacatcccaatacctatta |
111 |
Q |
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| T |
28212370 |
gagatgaaaattatgagatacgattatcacataccgctcgaatgttccggttgttcctgtacttccatattcactccaaacgacatcccaatacctatta |
28212469 |
T |
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| Q |
112 |
atccattgaggtcaacaatgttacaatatgttatggcttggatccaaattgtctacttttagaaaatcatgcatttgcatgcatcaattaatctagtcgt |
211 |
Q |
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| T |
28212470 |
atccattgaggtcaacaatgttacaatatgttatggcttggatccaaattgtctacttttagaaaatcatgcatttgcatgcatcaattaatttagtcgt |
28212569 |
T |
|
| Q |
212 |
catcgatttaaaattgatcaacccatattacatctttatttatggttgatttgagatcggacgaccaaaatcaataaatgagcacacatctgctacgtaa |
311 |
Q |
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| T |
28212570 |
catcgatttaaaattgatcaactcatattacatctttatttatggttgatttgagatcggacgaccaagatcaataagtgggcacacatctgctacgtaa |
28212669 |
T |
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| Q |
312 |
aatcttaaaaaatccattatagttgcatgattagtggaaaaagagaaattaatcttagtttgtttgtagtgatgtaccctct |
393 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
28212670 |
aatcttaaaaaatccattatagttgcatgattagtggaaaaagagaaattaatcttagtttgtttgtagtgatgtaccctct |
28212751 |
T |
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