View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF11888_low_2 (Length: 870)

Name: NF11888_low_2
Description: NF11888
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF11888_low_2
NF11888_low_2
[»] chr2 (2 HSPs)
chr2 (29-860)||(43059272-43060116)
chr2 (152-454)||(43061723-43062025)


Alignment Details
Target: chr2 (Bit Score: 698; Significance: 0; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 698; E-Value: 0
Query Start/End: Original strand, 29 - 860
Target Start/End: Original strand, 43059272 - 43060116
Alignment:
Q  29 tcttcatccacacgaaaccaaaccacagcaacacaccgatgaccaccacctatggaacaatcccaaccccattatccccgctcc------------aatt 116  Q
    ||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |||||||            ||||    
T  43059272 tcttcatccacacgaaaccaaaccacatcaacacaccgatgaccaccacctatggaacaatcccaaccccattatctccgctccaaacaaacctccaatt 43059371  T
Q  117 aatatcacgtaccaacgaaagcatcaaattcgtcatcggaactcgccgtccatggaaacttttcttcaacgttcaatcattcaacctcccaagcaatttc 216  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||    
T  43059372 aatatcacgtaccaacgaaagcatcaaattcgtcatcggaactcgccgtccatggaaacttttcttcaacgttcaatcattcaacctcccacgcaatttc 43059471  T
Q  217 aacgacgcaatctctcggtataaaatcaacatctgcttcttcgagatgaactacactatcatcctcctcatcatcctcttcctcagtcttctattgcatc 316  Q
    ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| ||||    
T  43059472 aacgatgcaatctctcggtataaaatcaacatctgcttcttcgagatgaactacactatcatcctcgtcatcatcctcttcctcagtcttctatttcatc 43059571  T
Q  317 caacttcgctcatcgtcttccttgaactcatggcttcgtggctcttcctctatttccttcgtgatgaaccgtttattgtgtttggaagactcatcagtga 416  Q
    |||||||||||||||||||||| |||||||||||||| ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||    
T  43059572 caacttcgctcatcgtcttcctcgaactcatggcttcctggctcttcctctatttccttcgtgatgaaccgtttactgtgtttggaagactcatcagtga 43059671  T
Q  417 tcgtgttgttgtttttccgatgttgattctcaccgttgtgttcattctctttatcggcacaatcttcaacatattcgttgcggttttcatgtgtgttgtt 516  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  43059672 tcgtgttgttgtttttccgatgttgattctcaccgttgtgttcattctctttatcggcacaatcttcaacatattcgttgcggttttcatgtgtgttgtt 43059771  T
Q  517 attgttcttcacgctgctttcagaaacacaaatgattattctatagctgatctatttattgatgaagaagatgtaatttcgttttctcctccaaatgtct 616  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||    
T  43059772 attgttcttcacgctgctttcagaaacacaaatgattattctatagctgatctatttatagatgaagaagatgtaatttcgttttctcctccaaatgtct 43059871  T
Q  617 cataannnnnnnnnnnnnnaacccttgataaatcaagattttaga-cctctgtaatggtggatgtttcacctatttaacatgcaccatctttcttcactt 715  Q
    |||||              |||||||||||||||||||||||||| ||||  ||||||||||||||||||||||||||||||||||||||||||||||||    
T  43059872 cataatttttaatttttttaacccttgataaatcaagattttagaccctcaataatggtggatgtttcacctatttaacatgcaccatctttcttcactt 43059971  T
Q  716 ttcgtagggtccaaatgtctcctttgacatgtgtttgggacaaaattttcacaaattggttgctcttcatatcttcaatgtacttgctctcccttgcttc 815  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||    
T  43059972 ttcgtagggtccaaatgtctcctttgacatgtgtttgggacaaaattttcacaaattggttgctcttcatatcttcaatgtacttgctctgccttgcttc 43060071  T
Q  816 cataacttctatacataagatgccttttcctccatcattcctatg 860  Q
    ||||||||||||| |||||||||||||||||||||||||||||||    
T  43060072 cataacttctatatataagatgccttttcctccatcattcctatg 43060116  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 84; E-Value: 2e-39
Query Start/End: Original strand, 152 - 454
Target Start/End: Original strand, 43061723 - 43062025
Alignment:
Q  152 tcggaactcgccgtccatggaaacttttcttcaacgttcaatcattcaacctcccaagcaatttcaacgacgcaatctctcggtat-aaaatcaacatct 250  Q
    |||| ||||||||||||||||||||  || ||||| | |  || ||||||||||||  ||| ||| ||||||| ||||| || ||| |||| ||||||||    
T  43061723 tcggtactcgccgtccatggaaactcctcgtcaacctccgttccttcaacctcccatccaacttccacgacgctatctcccg-tatcaaaaccaacatct 43061821  T
Q  251 gcttcttcgagatgaactacactatcatcctcctcatcatcctcttcctcagtcttctattgcatccaacttcgctcatcgtcttccttgaactcatggc 350  Q
      |||||| ||||||||||| | |||||||| |||||||||||||||||||||||||| | ||||||||  || |||||||||||| | |  ||||| ||    
T  43061822 ctttcttccagatgaactacgccatcatccttctcatcatcctcttcctcagtcttctctggcatccaatctcactcatcgtcttcgtcgttctcatagc 43061921  T
Q  351 ttcgtggctcttcctctatttccttcgtgatgaaccgtttattgtgtttggaagactcatcagtgatcgtgttgttgtttttccgatgttgattctcacc 450  Q
    | ||||| | || ||||| || ||||| ||||||||  || || | |||||| |||||||||||||||||||| || || | |  |||||||||||||||    
T  43061922 tgcgtggttgtttctctactttcttcgcgatgaacctattgttatctttggacgactcatcagtgatcgtgttattcttgtgcttatgttgattctcacc 43062021  T
Q  451 gttg 454  Q
    ||||    
T  43062022 gttg 43062025  T

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