View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11888_low_20 (Length: 400)
Name: NF11888_low_20
Description: NF11888
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11888_low_20 |
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Alignment Details
Target: chr8 (Bit Score: 333; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 333; E-Value: 0
Query Start/End: Original strand, 1 - 398
Target Start/End: Original strand, 35430545 - 35430932
Alignment:
| Q |
1 |
aatgatccattccctctctgtgcttttaatttctagttttgttttaatgaattgaaacaggaaattttatcatgatatatctatattctctgcagttata |
100 |
Q |
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| T |
35430545 |
aatgatccattccctctctgtgcttttaatttctagttttgttttaatgaattgaaacatgaaattttatcatgatatatctatattctctgcagttata |
35430644 |
T |
|
| Q |
101 |
atgaatgttatttacaacaatgaaattgtttgtctagcgtagcattaattcctacgggctacaaaattttggtctgcaaggtgcagtaagggttctctat |
200 |
Q |
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| T |
35430645 |
atgaatgttatttacaacaatgaaattgtttgtctagcgtagcattaattcctac-------aaaattttggtctgcaaggtgcagtaagggttct--at |
35430735 |
T |
|
| Q |
201 |
tagattagttggtcggtgcttttgataattctttacatgttcattaaatttctttgacgtacgttctttagtttttatgtatgtcattctttagcatgaa |
300 |
Q |
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||||||||||||||||||||| || |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |
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| T |
35430736 |
tagattagttggtcggtgcttctggtaattctttacatgttcattaaatttctttgacgtacgttctttagtttttatgtatgtcattcgttagcatgaa |
35430835 |
T |
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| Q |
301 |
ttgttttaactaaaacactgctatttagaagattggaattttcagtttgttcatttaaatttttgctctcttgaacttttccaaattttcctttgctt |
398 |
Q |
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| T |
35430836 |
ttgttttaactaaaacactgctatttagaagattggaattttcagtttgttcaattaaatttttgctctcttgaac-tttccaaattttcctttgctt |
35430932 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 319 - 394
Target Start/End: Complemental strand, 30426416 - 30426340
Alignment:
| Q |
319 |
tgctatttagaagattggaattttcagtttgttcatttaaa-tttttgctctcttgaacttttccaaattttccttt |
394 |
Q |
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|||||||||||||||| ||||||||| |||||| ||||||| |||| |||| |||| ||||| | ||||||||||| |
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| T |
30426416 |
tgctatttagaagatttgaattttcaatttgtttatttaaagttttggctccattgacctttttccaattttccttt |
30426340 |
T |
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