View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11888_low_21 (Length: 365)
Name: NF11888_low_21
Description: NF11888
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11888_low_21 |
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Alignment Details
Target: chr2 (Bit Score: 335; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 335; E-Value: 0
Query Start/End: Original strand, 16 - 362
Target Start/End: Original strand, 40925046 - 40925391
Alignment:
| Q |
16 |
gagagaatggattgagagaaggcttaaagagaattcacaaatatttacctgtgctggttgaaatctggggataatatagagatgaatgtgcaccttaatg |
115 |
Q |
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| T |
40925046 |
gagagaatggattgagagaaggcttaaa-agaattcacaaatatttacctgtgctggttgaaatctggggataatatagagatgaatgtgcaccttaatg |
40925144 |
T |
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| Q |
116 |
aatcaatttacaaaggaatgaatgttgtttatgcggtgtatgattcattttatatatgatttgtttcattgtaatatctgtaaaatataattgtgctttt |
215 |
Q |
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| T |
40925145 |
aatcaatttacaaaggaatgaatgttgtttatgcgctgtatgattcattttatatatgatttgtttcattgtaatatctgtaaaatataattgtgctttt |
40925244 |
T |
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| Q |
216 |
cttttggtacagaaagagcgatataattttatcttttatattacagaattatgataaatcattgaggtcaaatatcaaaatcattttgtatggacataaa |
315 |
Q |
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| T |
40925245 |
cttttggtacagaaagagcgatataattttatcttttatattacagaattatgataaatcattgaggtcaaatatcaaaatcattttgtatggacataaa |
40925344 |
T |
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| Q |
316 |
aatcatttatttattattgattttcacattgggaaacagtaatgaac |
362 |
Q |
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| T |
40925345 |
aatcatttatttattattgattttcacattgggaaacagtaatgaac |
40925391 |
T |
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