View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF11888_low_22 (Length: 352)
Name: NF11888_low_22
Description: NF11888
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11888_low_22 |
 | |
|
| [»] chr8 (4 HSPs) |
| |
|
Alignment Details
Target: chr8 (Bit Score: 196; Significance: 1e-106; HSPs: 4)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 196; E-Value: 1e-106
Query Start/End: Original strand, 132 - 352
Target Start/End: Complemental strand, 2748424 - 2748208
Alignment:
| Q |
132 |
tgtttctggcactgctcggcgccttcttggtggcggtggcggtggtgatgatccattcggattcacggatgaaaaagttggatactgcactgccaaggta |
231 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
2748424 |
tgtttctggcactgctcggcgccttcttggtggcggtggcggtggtgatgatccattcggattcacggatgaaaaagttggatactgcactgccaaggta |
2748325 |
T |
|
| Q |
232 |
ttgaaattatgtctattagccctgaccttgtaatttcaagggacaaagtcatataccattcttattctctttgtttagacaattttaatttgatgattta |
331 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| ||||||||||||| |
|
|
| T |
2748324 |
ttgaaattatgtctattagccctgaccttgtaatttcaagggacaaagtcatataccattctta----atttgtttagacaattttgatttgatgattta |
2748229 |
T |
|
| Q |
332 |
atcattttattcactttaatc |
352 |
Q |
| |
|
||||||||||||||||||||| |
|
|
| T |
2748228 |
atcattttattcactttaatc |
2748208 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 117; E-Value: 1e-59
Query Start/End: Original strand, 1 - 117
Target Start/End: Complemental strand, 2748582 - 2748466
Alignment:
| Q |
1 |
ttcatttctctatttctgactataacacaaaatgggataacaaaaatttgtgttcctgatgagtggacttatcatatgcttccttgtagtcttgaggaga |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
2748582 |
ttcatttctctatttctgactataacacaaaatgggataacaaaaatttgtgttcctgatgagtggacttatcatatgcttccttgtagtcttgaggaga |
2748483 |
T |
|
| Q |
101 |
tagaagaagaagagatg |
117 |
Q |
| |
|
||||||||||||||||| |
|
|
| T |
2748482 |
tagaagaagaagagatg |
2748466 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 23 - 90
Target Start/End: Complemental strand, 2756617 - 2756550
Alignment:
| Q |
23 |
taacacaaaatgggataacaaaaatttgtgttcctgatgagtggacttatcatatgcttccttgtagt |
90 |
Q |
| |
|
|||||||||||||||| | ||||||||||||||| | || |||||| ||||||||||||||||||| |
|
|
| T |
2756617 |
taacacaaaatgggatgataaaaatttgtgttccggtagaatggactattcatatgcttccttgtagt |
2756550 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 199 - 240
Target Start/End: Complemental strand, 2756417 - 2756376
Alignment:
| Q |
199 |
gatgaaaaagttggatactgcactgccaaggtattgaaatta |
240 |
Q |
| |
|
|||||| || |||||||||| ||||||||||||||||||||| |
|
|
| T |
2756417 |
gatgaagaaattggatactgtactgccaaggtattgaaatta |
2756376 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University