View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11888_low_24 (Length: 338)
Name: NF11888_low_24
Description: NF11888
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11888_low_24 |
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Alignment Details
Target: chr4 (Bit Score: 292; Significance: 1e-164; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 292; E-Value: 1e-164
Query Start/End: Original strand, 14 - 321
Target Start/End: Complemental strand, 34764042 - 34763735
Alignment:
| Q |
14 |
caaaggcacttcgccatcttccaaatccaccaagccctaaaccacgtcttccattcataggtcatcttcatcttttggataacccacttcttcaccacac |
113 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||||||||||||||||||||||||||||||||||||||||| |
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| T |
34764042 |
caaaggcacttcgccatcttccaaatccaccaagccctaaaccacgtcttcctttcattggtcatcttcatcttttggataacccacttcttcaccacac |
34763943 |
T |
|
| Q |
114 |
tcttatcaagttaggaaagcgttatggacctttgtacactctttactttggttccatgcctaccgttgttgcatccactcctgacttgtttaaacttttc |
213 |
Q |
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|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34763942 |
tcttatcaagttaggaaagcgttatggacctttgtacactctttactttggttccatgcctaccgttgttgcatccactcctgacttgtttaaacttttc |
34763843 |
T |
|
| Q |
214 |
cttcaaacccatgaagctacttcctttaacacaagattccaaacctctgctattagtcgtcttacctatgataattctgttgctatggttccatttgcac |
313 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || ||||||||||||||||||||||||| |
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| T |
34763842 |
cttcaaacccatgaagctacttcctttaacacaagattccaaacctctgctattagtcgtcttacctatgaaaaatctgttgctatggttccatttgcac |
34763743 |
T |
|
| Q |
314 |
cttattgg |
321 |
Q |
| |
|
|||||||| |
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|
| T |
34763742 |
cttattgg |
34763735 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 292; E-Value: 1e-164
Query Start/End: Original strand, 14 - 321
Target Start/End: Original strand, 34780070 - 34780377
Alignment:
| Q |
14 |
caaaggcacttcgccatcttccaaatccaccaagccctaaaccacgtcttccattcataggtcatcttcatcttttggataacccacttcttcaccacac |
113 |
Q |
| |
|
||||||| |||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |
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| T |
34780070 |
caaaggctcttcgccaccttccaaatccaccaagccctaaaccacgtcttccattcataggtcatcttcaccttttggataacccacttcttcaccacac |
34780169 |
T |
|
| Q |
114 |
tcttatcaagttaggaaagcgttatggacctttgtacactctttactttggttccatgcctaccgttgttgcatccactcctgacttgtttaaacttttc |
213 |
Q |
| |
|
||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34780170 |
tcttatcaagttaggaaagcgttatggccctttgtacactctttactttggttccatgcctaccgttgttgcatccactcctgacttgtttaaacttttc |
34780269 |
T |
|
| Q |
214 |
cttcaaacccatgaagctacttcctttaacacaagattccaaacctctgctattagtcgtcttacctatgataattctgttgctatggttccatttgcac |
313 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34780270 |
cttcaaacccatgaagctacttcctttaacacaagattccaaacctctgctattagtcgtcttacctatgataattctgttgctatggttccatttgcac |
34780369 |
T |
|
| Q |
314 |
cttattgg |
321 |
Q |
| |
|
|||||||| |
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|
| T |
34780370 |
cttattgg |
34780377 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 212; E-Value: 1e-116
Query Start/End: Original strand, 14 - 317
Target Start/End: Complemental strand, 34756066 - 34755763
Alignment:
| Q |
14 |
caaaggcacttcgccatcttccaaatccaccaagccctaaaccacgtcttccattcataggtcatcttcatcttttggataacccacttcttcaccacac |
113 |
Q |
| |
|
||||||| |||||||| ||||| ||||| || || || ||||| |||||||||| ||| ||||||||||| |||||||||||||| |||||||||||||| |
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|
| T |
34756066 |
caaaggctcttcgccaccttcccaatcctccgagtcccaaacctcgtcttccatccattggtcatcttcaccttttggataaccctcttcttcaccacac |
34755967 |
T |
|
| Q |
114 |
tcttatcaagttaggaaagcgttatggacctttgtacactctttactttggttccatgcctaccgttgttgcatccactcctgacttgtttaaacttttc |
213 |
Q |
| |
|
|||||||||||||||| | |||||||| |||||||||||||||||||||||||||||||||||| ||||||| || || ||||||||||||||||||||| |
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|
| T |
34755966 |
tcttatcaagttaggagaacgttatggccctttgtacactctttactttggttccatgcctaccattgttgcctcaacccctgacttgtttaaacttttc |
34755867 |
T |
|
| Q |
214 |
cttcaaacccatgaagctacttcctttaacacaagattccaaacctctgctattagtcgtcttacctatgataattctgttgctatggttccatttgcac |
313 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| || |||||||||||||||||||||| || |
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|
| T |
34755866 |
cttcaaacccatgaagctacttcctttaacacaaggttccaaacctctgctattagtcgtcttacctatgacaactctgttgctatggttccatttggac |
34755767 |
T |
|
| Q |
314 |
ctta |
317 |
Q |
| |
|
|||| |
|
|
| T |
34755766 |
ctta |
34755763 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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