View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11888_low_25 (Length: 333)
Name: NF11888_low_25
Description: NF11888
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11888_low_25 |
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Alignment Details
Target: chr8 (Bit Score: 278; Significance: 1e-155; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 278; E-Value: 1e-155
Query Start/End: Original strand, 1 - 314
Target Start/End: Complemental strand, 181026 - 180713
Alignment:
| Q |
1 |
atgtttagcatttgggacacaaagcaccttatttaatttgaaagtaatattgggggtagggagggtaatagagccaacatgtgaaattttcaaacctgta |
100 |
Q |
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||||||||||||||||||||||||||| ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |||||||||||| |
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| T |
181026 |
atgtttagcatttgggacacaaagcacattatttaatttgaaagtaatatttggggtagggagggtaatagagccaacatgtgaaatattcaaacctgta |
180927 |
T |
|
| Q |
101 |
ccatcaccaatctgaacttcttcgggaccatcatattcggagtgaagctgcatattgttcagatttgatgttatacgatgactggctccagtgtcaaaca |
200 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |||||| |||| |
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| T |
180926 |
ccatcaccaatctgaacttcttcgggaccatcatattcggagtgaagctgcatattgttcagatttgatgttatatgatgactggctctagtgtcgaaca |
180827 |
T |
|
| Q |
201 |
cccagttaggagcagccgaatgtgaagcagaagcgaaatttaccattggttgattgttgcggtgccgcagcggaggacattacttagcaatatggccaag |
300 |
Q |
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||||||||||||||||||||||||||| ||||||||||||| ||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |
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| T |
180826 |
cccagttaggagcagccgaatgtgaagtagaagcgaaatttgccattggttgattgttgcgttgccgcagcggaggacattacttagcaatatggccaag |
180727 |
T |
|
| Q |
301 |
gaaagagcagagtt |
314 |
Q |
| |
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|||||||||||||| |
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| T |
180726 |
gaaagagcagagtt |
180713 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 250; Significance: 1e-139; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 250; E-Value: 1e-139
Query Start/End: Original strand, 1 - 314
Target Start/End: Complemental strand, 1701453 - 1701140
Alignment:
| Q |
1 |
atgtttagcatttgggacacaaagcaccttatttaatttgaaagtaatattgggggtagggagggtaatagagccaacatgtgaaattttcaaacctgta |
100 |
Q |
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| T |
1701453 |
atgtttagcatttgggacacaaagcacattatttaatttgaaagtagtattgggggtagggagggtaatagagccaacatgtgaaattttcaaacctgta |
1701354 |
T |
|
| Q |
101 |
ccatcaccaatctgaacttcttcgggaccatcatattcggagtgaagctgcatattgttcagatttgatgttatacgatgactggctccagtgtcaaaca |
200 |
Q |
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||||||||||||||||||||||| ||||| |||||||||||||| |||||||||||||||||||||||||||||| ||||||||||||| ||||| |||| |
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| T |
1701353 |
ccatcaccaatctgaacttcttctggaccgtcatattcggagtgcagctgcatattgttcagatttgatgttatatgatgactggctcctgtgtcgaaca |
1701254 |
T |
|
| Q |
201 |
cccagttaggagcagccgaatgtgaagcagaagcgaaatttaccattggttgattgttgcggtgccgcagcggaggacattacttagcaatatggccaag |
300 |
Q |
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||||||||||||||||||||||||||||||||||||||||| ||| ||||||||||||||| || ||||| ||||||| |||||||||||||||||||| |
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| T |
1701253 |
cccagttaggagcagccgaatgtgaagcagaagcgaaatttgccactggttgattgttgcgttgtagcagctgaggacaatacttagcaatatggccaag |
1701154 |
T |
|
| Q |
301 |
gaaagagcagagtt |
314 |
Q |
| |
|
||||||||||||| |
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| T |
1701153 |
caaagagcagagtt |
1701140 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 67; Significance: 1e-29; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 74 - 212
Target Start/End: Original strand, 26593053 - 26593191
Alignment:
| Q |
74 |
ccaacatgtgaaattttcaaacctgtaccatcaccaatctgaacttcttcgggaccatcatattcggagtgaagctgcatattgttcagatttgatgtta |
173 |
Q |
| |
|
|||||||| ||||||||||||||||||||||||||||| || |||||||| || ||||||||||| ||||||| |||||||| |||||||||| | | |
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| T |
26593053 |
ccaacatgggaaattttcaaacctgtaccatcaccaatttgcacttcttctgggccatcatattcagagtgaatgtgcatattattcagatttgtgctga |
26593152 |
T |
|
| Q |
174 |
tacgatgactggctccagtgtcaaacacccagttaggag |
212 |
Q |
| |
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|| |||| ||||| ||||| ||||||||||| ||||||| |
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| T |
26593153 |
tatgatggctggccccagtatcaaacacccaattaggag |
26593191 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 60; Significance: 1e-25; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 69 - 212
Target Start/End: Complemental strand, 5400124 - 5399981
Alignment:
| Q |
69 |
tagagccaacatgtgaaattttcaaacctgtaccatcaccaatctgaacttcttcgggaccatcatattcggagtgaagctgcatattgttcagatttga |
168 |
Q |
| |
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||||||||||||| |||||||| |||||||||||||||||||| |||||||| ||||||||||||||||| || || | |||||||||||||| | |
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| T |
5400124 |
tagagccaacatgagaaatttttaaacctgtaccatcaccaatttgaacttcctcgggaccatcatattctgaatggatgtgcatattgttcaggctgtt |
5400025 |
T |
|
| Q |
169 |
tgttatacgatgactggctccagtgtcaaacacccagttaggag |
212 |
Q |
| |
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| | | |||| || |||||||||||||||||||||||||||| |
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| T |
5400024 |
ggcaacatgatggctagctccagtgtcaaacacccagttaggag |
5399981 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 56; Significance: 4e-23; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 69 - 212
Target Start/End: Complemental strand, 3541121 - 3540978
Alignment:
| Q |
69 |
tagagccaacatgtgaaattttcaaacctgtaccatcaccaatctgaacttcttcgggaccatcatattcggagtgaagctgcatattgttcagatttga |
168 |
Q |
| |
|
||||||||||||| |||||||| |||||||||||||||||||| |||||||| || |||||||||||||| || || | |||||||||||||| | |
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| T |
3541121 |
tagagccaacatgagaaatttttaaacctgtaccatcaccaatttgaacttcctctggaccatcatattctgaatggatgtgcatattgttcaggctgtt |
3541022 |
T |
|
| Q |
169 |
tgttatacgatgactggctccagtgtcaaacacccagttaggag |
212 |
Q |
| |
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| | | |||| || |||||||||||||||||||||||||||| |
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| T |
3541021 |
ggcaacatgatggctagctccagtgtcaaacacccagttaggag |
3540978 |
T |
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