View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11888_low_27 (Length: 312)
Name: NF11888_low_27
Description: NF11888
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11888_low_27 |
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Alignment Details
Target: chr3 (Bit Score: 276; Significance: 1e-154; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 276; E-Value: 1e-154
Query Start/End: Original strand, 17 - 300
Target Start/End: Original strand, 2588405 - 2588688
Alignment:
| Q |
17 |
agattaagagtattgctagacgttcgaggagcctgcaaaatagattcactgctaaggatacagctatttggcttgctgttattgattatgaagaaagatt |
116 |
Q |
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| T |
2588405 |
agattaagagtattgctagacgttcgaggagcctgcaaaatagattcactgctaaggatacagctatttggcttgctgttattgattatgaagaaagatt |
2588504 |
T |
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| Q |
117 |
ggcaagagaaatgtatcctgaatcattcttaaattcttcttgtgttggtgaaagcagttatgcgtctgtggaaacagatgattatgatgtggaatgtgat |
216 |
Q |
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||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2588505 |
ggcaagagaaatgtatcctgaatcattcttaaaatcttcttgtgttggtgaaagcagttatgcgtctgtggaaacagatgattatgatgtggaatgtgat |
2588604 |
T |
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| Q |
217 |
gagcacaatctaggaaaacctttatcatcatgtgagggttctgataccaacatggttcatcaacttgaagaaactaattcttct |
300 |
Q |
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||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2588605 |
gagcacaatctagaaaaacctttatcatcatgtgagggttctgataccaacatggttcatcaacttgaagaaactaattcttct |
2588688 |
T |
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