View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11888_low_29 (Length: 287)
Name: NF11888_low_29
Description: NF11888
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11888_low_29 |
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Alignment Details
Target: chr6 (Bit Score: 185; Significance: 1e-100; HSPs: 4)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 185; E-Value: 1e-100
Query Start/End: Original strand, 5 - 244
Target Start/End: Original strand, 30935217 - 30935454
Alignment:
| Q |
5 |
ttacaaattcagagattatctcgtctgttcattcattcattttttcaggtgaaagacttcttaccataatatatagtggcagagcttttcttttcaagaa |
104 |
Q |
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| T |
30935217 |
ttacaaattcagagactatcttgtctattcattcatt--ttttttcaggtaaaagaccgcttaccataatatatagtggcagagcctttcttttcaagaa |
30935314 |
T |
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| Q |
105 |
tgtgagcttcatcaaaataatttgtggcttttctaagttgctcataggggaagatttgccaattcaatttattctgctttggaaatatgtcagaagtgct |
204 |
Q |
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| T |
30935315 |
tgtgagcttcatcaaaataatttgtggctttcctaagtagctcataggggaagatttgccacttcaatttattctgctttggaaatatgtcagaagtgct |
30935414 |
T |
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| Q |
205 |
agtgaagcagcaacacatacagagatcccaccccattgcc |
244 |
Q |
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| T |
30935415 |
agtgaagcagcagcacatacagagatcccaccccattgcc |
30935454 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 138; E-Value: 3e-72
Query Start/End: Original strand, 44 - 241
Target Start/End: Original strand, 30994163 - 30994360
Alignment:
| Q |
44 |
ttttttcaggtgaaagacttcttaccataatatatagtggcagagcttttcttttcaagaatgtgagcttcatcaaaataatttgtggcttttctaagtt |
143 |
Q |
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| T |
30994163 |
ttttatcaggtaaaacacttcttaccataatatacagtgggcgagcctttcttatcaagaatgtgagcttcatcaaaataatttgtggcttttctaagtt |
30994262 |
T |
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| Q |
144 |
gctcataggggaagatttgccaattcaatttattctgctttggaaatatgtcagaagtgctagtgaagcagcaacacatacagagatcccaccccatt |
241 |
Q |
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| T |
30994263 |
gctcatatgggaagatttgccaattcaatttactctgctttggaaatgtttcagatgtgctagtgaagcagcaacacatacagatatcccacctcatt |
30994360 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 44 - 135
Target Start/End: Original strand, 30965416 - 30965507
Alignment:
| Q |
44 |
ttttttcaggtgaaagacttcttaccataatatatagtggcagagcttttcttttcaagaatgtgagcttcatcaaaataatttgtggcttt |
135 |
Q |
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|||||||| || |||||||||||||||||||||| |||||| |||| | ||||||||||||||||||||| ||||||||||| ||||||||| |
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| T |
30965416 |
ttttttcatgtaaaagacttcttaccataatatacagtggccgagcctctcttttcaagaatgtgagcttgatcaaaataatatgtggcttt |
30965507 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 180 - 241
Target Start/End: Original strand, 30965503 - 30965564
Alignment:
| Q |
180 |
gctttggaaatatgtcagaagtgctagtgaagcagcaacacatacagagatcccaccccatt |
241 |
Q |
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| T |
30965503 |
gctttggaaatgtttcagaagtgctagtgaagcagcagcacatagagagatctcacctcatt |
30965564 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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