View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11888_low_3 (Length: 768)
Name: NF11888_low_3
Description: NF11888
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11888_low_3 |
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Alignment Details
Target: chr1 (Bit Score: 542; Significance: 0; HSPs: 4)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 542; E-Value: 0
Query Start/End: Original strand, 20 - 741
Target Start/End: Complemental strand, 6840769 - 6840061
Alignment:
| Q |
20 |
aagccgatgctttatgcttcgggagtagaagtttatgatctaagcactcagtcatggacccctgtccatcctcctccttttaactggatcacagttcatt |
119 |
Q |
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||||||||||||||||||||||||| |||| ||||| |||||||||||||||||||||||||||||||||||||||||||||| |||||| |
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| T |
6840769 |
aagccgatgctttatgcttcgggagcagaattttat-----------tcagtcatggacccctgtccatcctcctccttttaactggatcacaattcatt |
6840681 |
T |
|
| Q |
120 |
ataatcctgcttatacaccggttgttaactgcgtttattattggattacaaccgttaannnnnnnactatttaaaacattctttgttttgactttcgcaa |
219 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| ||||||| ||||||||||||||||||||||||||| |
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| T |
6840680 |
ataatcctgcttatacaccggttgttaactgcgtttattattggattacagccgttaatttttttactatttcaaacattctttgttttgactttcgcaa |
6840581 |
T |
|
| Q |
220 |
caatcagtttcacgaactcaaagctccgcgtattgctgttgaaaattctattgaaaacattgccgagatcaagggttcacttgcttatgttttggagtat |
319 |
Q |
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| T |
6840580 |
caatcagtttcacgaactcaaagctccgcgtattgctgttgaacattctattgaaaacattgccgagatcaagggttcacttgcttatgttttggagtat |
6840481 |
T |
|
| Q |
320 |
catcttcctagtcctatctagttggaaatttggactatggatcaaagtgggtgggctaaaaagtacaacattggactggttgagtggacttgttgcagac |
419 |
Q |
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|||||||||||||||||| ||||||||||||||| |||||||||||| |||||||||||||||||||||||||||| ||||||||||||||||||||||| |
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| T |
6840480 |
catcttcctagtcctatccagttggaaatttggattatggatcaaagcgggtgggctaaaaagtacaacattggaccggttgagtggacttgttgcagac |
6840381 |
T |
|
| Q |
420 |
gtggtttttggaaggatggcgatcgagtttttggaggaaaggttggacagttgttgacttcgtatgaagatcaaggaaacctgcatagcgaatctcaaat |
519 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||| || ||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
6840380 |
gtggtttttggaaggatggcgatcgagtttttggaggaaaggttggacagctgctgacttcgtatgaagatcaaggaaacctgcatagcgaatctcaaac |
6840281 |
T |
|
| Q |
520 |
ttatctattgaagtatgatagatgtttatggggtcatgagtatttgcagagcataactcccttgtcaacctagctagctagcatgtgataaactagataa |
619 |
Q |
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| |||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
6840280 |
t--tctattgaagtatgatagatgtttattgggtcatgagtatttgcagagcataactcccttgtcaacctagctagctagcatgtgataaactagatac |
6840183 |
T |
|
| Q |
620 |
attggttattcaataaacttgnnnnnnntatgannnnnnngcttatatttgagaatggagggagtaagatatatttatttattttagtcaagtaagtata |
719 |
Q |
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||||||||||||||||||||| ||||| |||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |
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| T |
6840182 |
attggttattcaataaacttgaaaaaaatatgaattttttgcttatatttgagaatggagggagcaagatatatttatttattttagtcaagtaagtata |
6840083 |
T |
|
| Q |
720 |
tgccctctcatacttatgctta |
741 |
Q |
| |
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|||||| ||||||||||||||| |
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| T |
6840082 |
tgccctgtcatacttatgctta |
6840061 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 137; E-Value: 4e-71
Query Start/End: Original strand, 46 - 594
Target Start/End: Original strand, 1178140 - 1178691
Alignment:
| Q |
46 |
agaagtttatgatctaagcactcagtcatggacccctgtccatcctcctcc---ttttaactggatcacagttcattataatcctgcttatacaccggtt |
142 |
Q |
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|||||| ||||||||||||||| | ||||||||||||||||||| ||||| ||||||| | ||| |||||| || ||||| | ||||| |||||| |
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| T |
1178140 |
agaagtgtatgatctaagcactaaatcatggacccctgtccatcaccctccatcttttaaccgcatcccagttcgatacaatccatcatataccccggtt |
1178239 |
T |
|
| Q |
143 |
gttaactgcgtttattattggattacaaccgttaannnnnnnactatttaaaacattctttgttttgactttcgcaacaatcagtttcacgaactcaaag |
242 |
Q |
| |
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|||||||| |||||| |||||||| || || | |||| || |||||| | || |||||||||| |||||||||||||||| ||||||||| |
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| T |
1178240 |
gttaactgtgtttatcattggattgttactgtcgatttgtatactacttcaaacatcatctgctttgactttcacaacaatcagtttcaccaactcaaag |
1178339 |
T |
|
| Q |
243 |
ctccgcgtattgctgttgaaaattctattgaaaacattgccgagatcaagggttcacttgcttatgttttggagtatcatcttcctagtcctatctagtt |
342 |
Q |
| |
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|||| || |||| || |||||| ||||| || || ||||||||||| || ||||||||| ||||||||||||||| ||||||||| | | |||| |
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| T |
1178340 |
ctccctgtcggcatgttcaacattctagcgaaaatatcgctgagatcaagggctcccttgcttatattttggagtatcatcatcctagtccgacccagtt |
1178439 |
T |
|
| Q |
343 |
ggaaatttggactatggatcaaagtgggtgggctaaaaagtacaacattggactggttgagtggacttgttgcagacgtggtttttggaaggatggcgat |
442 |
Q |
| |
|
|||||| |||| ||||||||| | ||||| | |||| ||||||||||| | ||| |||||| ||||||| | ||| ||| ||||||||||||||| |
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| T |
1178440 |
ggaaatctggattatggatcagaaccggtggaccaaaatttacaacattgggccagttccgtggacatgttgcataagtgatttctggaaggatggcgat |
1178539 |
T |
|
| Q |
443 |
cgagtttttggaggaaaggttggacagttgttgacttcgtatgaagatcaaggaaacctgcatagcgaatctcaaatttatctattgaagtatgatagat |
542 |
Q |
| |
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| ||| |||||||||||||||||| ||||| || | || ||||| |||||||| ||| || ||||| | |||||||||| | ||||| || |||||| |
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| T |
1178540 |
caagtctttggaggaaaggttggaaagttgctggcatcatatgacgatcaaggcaactcgctcagcgattttcaaatttatgttttgaattactatagat |
1178639 |
T |
|
| Q |
543 |
gtttatggggtcatgagtatttgcagagcataactcccttgtcaacctagct |
594 |
Q |
| |
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||||||||||| ||||||||| ||||||||||||||||||||||||||||| |
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| T |
1178640 |
gtttatggggttctgagtatttacagagcataactcccttgtcaacctagct |
1178691 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 272 - 393
Target Start/End: Complemental strand, 7496773 - 7496652
Alignment:
| Q |
272 |
gaaaacattgccgagatcaagggttcacttgcttatgttttggagtatcatcttcctagtcctatctagttggaaatttggactatggatcaaagtgggt |
371 |
Q |
| |
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||||| || ||||||||||||||||| ||||||||||||||||||||||||| || | |||| | |||||||||||||| |||||||||| | || |
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| T |
7496773 |
gaaaatatagccgagatcaagggttctcttgcttatgttttggagtatcatcatctttgtccgacacagttggaaatttgggttatggatcaaggaaagt |
7496674 |
T |
|
| Q |
372 |
gggctaaaaagtacaacattgg |
393 |
Q |
| |
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|||| ||||||||||||||||| |
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| T |
7496673 |
gggcaaaaaagtacaacattgg |
7496652 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 206 - 239
Target Start/End: Original strand, 7873477 - 7873510
Alignment:
| Q |
206 |
tttgactttcgcaacaatcagtttcacgaactca |
239 |
Q |
| |
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||||||||||||||||| |||||||||||||||| |
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| T |
7873477 |
tttgactttcgcaacaaccagtttcacgaactca |
7873510 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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