View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF11888_low_30 (Length: 285)

Name: NF11888_low_30
Description: NF11888
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF11888_low_30
NF11888_low_30
[»] chr5 (8 HSPs)
chr5 (16-285)||(13446681-13446954)
chr5 (18-285)||(13426027-13426294)
chr5 (16-282)||(13419135-13419400)
chr5 (142-282)||(13453764-13453904)
chr5 (185-282)||(13412958-13413055)
chr5 (185-285)||(13385523-13385623)
chr5 (179-285)||(13373039-13373145)
chr5 (185-285)||(13389344-13389444)
[»] chr4 (1 HSPs)
chr4 (179-285)||(47601119-47601225)
[»] chr8 (1 HSPs)
chr8 (245-285)||(28430727-28430767)


Alignment Details
Target: chr5 (Bit Score: 233; Significance: 1e-129; HSPs: 8)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 233; E-Value: 1e-129
Query Start/End: Original strand, 16 - 285
Target Start/End: Original strand, 13446681 - 13446954
Alignment:
Q  16 ctgtgtcaataatgccattcaaagtactcgttgcagcctataaaacgttgtacaatattagtttcttgatta----acattatcaatttctgaagtaata 111  Q
    ||||||||||||||||||||||||||||||||||||||||||||| |||||||| |||||||||||||||||    |||||||||||||||||| ||||     
T  13446681 ctgtgtcaataatgccattcaaagtactcgttgcagcctataaaatgttgtacattattagtttcttgattaattaacattatcaatttctgaaataatg 13446780  T
Q  112 aaaattcagaaattaatcaaatgaatcatatacctgcatctgttctggatcgcggcttactagaaacgagtctgctcctaagtgttccattgcttccttt 211  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||    
T  13446781 aaaattcagaaattaatcaaatgaatcatatacctgcatctgttctggatcgcggcttactagaaacgagtctgctcctaagtgttctattgcttccttt 13446880  T
Q  212 tcctttttaggcgacgtactaattacagtcactttagcaccaaaagctttagcaaatttcacagccatatgacc 285  Q
    |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||    
T  13446881 tcctttttaggcgacgtactaattacggtcactttagcaccaaaagctttagcaaatttcacagccatatgacc 13446954  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 153; E-Value: 4e-81
Query Start/End: Original strand, 18 - 285
Target Start/End: Original strand, 13426027 - 13426294
Alignment:
Q  18 gtgtcaataatgccattcaaagtactcgttgcagcctat-aaaacgttgtacaatattagtttcttgattaacattatcaatttctgaagtaataaaaat 116  Q
    ||||| ||||| ||||||||||||| | ||||||||||| |||||||||||||||||||||||||||||||||||| || ||||||||| |||| ||| |    
T  13426027 gtgtcgataataccattcaaagtacccattgcagcctattaaaacgttgtacaatattagtttcttgattaacattctcgatttctgaaataatgaaa-t 13426125  T
Q  117 tcagaaattaatcaaatgaatcatatacctgcatctgttctggatcgcggcttactagaaacgagtctgctcctaagtgttccattgcttccttttcctt 216  Q
    ||  |||| |||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |||||||| ||||| || ||||||||||| ||    
T  13426126 tcgcaaatcaatcaaatgaatcatatacctgcatctgatctggatcgcggcttactagaaacgagtcagctcctaaatgttctatcgcttccttttcttt 13426225  T
Q  217 tttaggcgacgtactaattacagtcactttagcaccaaaagctttagcaaatttcacagccatatgacc 285  Q
      ||||||| ||||||||||| || || ||||||||||||||||| || ||||||||||||||||||||    
T  13426226 gctaggcgatgtactaattactgttacattagcaccaaaagctttggcgaatttcacagccatatgacc 13426294  T

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Target: chr5; HSP #3
Raw Score: 139; E-Value: 9e-73
Query Start/End: Original strand, 16 - 282
Target Start/End: Original strand, 13419135 - 13419400
Alignment:
Q  16 ctgtgtcaataatgccattcaaagtactcgttgcagcctataaaacgttgtacaatattagtttcttgattaacattatcaatttctgaagtaataaaaa 115  Q
    ||||||||||||| ||||||||||||| | |||||| |||| ||| |||||||||||||||||| ||||||| ||||  |||||||| || | ||   ||    
T  13419135 ctgtgtcaataataccattcaaagtacccattgcagtctatgaaatgttgtacaatattagtttattgattaccattgccaatttctaaaat-attttaa 13419233  T
Q  116 ttcagaaattaatcaaatgaatcatatacctgcatctgttctggatcgcggcttactagaaacgagtctgctcctaagtgttccattgcttccttttcct 215  Q
    |||| |||| |||||||||||||||||||||||||||| || |||||||||||||||||||||||||| ||||| |||||||| |||||||||||||| |    
T  13419234 ttcacaaatgaatcaaatgaatcatatacctgcatctgatcaggatcgcggcttactagaaacgagtcagctcccaagtgttctattgcttccttttctt 13419333  T
Q  216 ttttaggcgacgtactaattacagtcactttagcaccaaaagctttagcaaatttcacagccatatg 282  Q
    | | |||||| ||||||||||| ||||| |||||||| |||||||| ||||||||||||||||||||    
T  13419334 tgtgaggcgatgtactaattacggtcacattagcaccgaaagcttttgcaaatttcacagccatatg 13419400  T

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Target: chr5; HSP #4
Raw Score: 69; E-Value: 5e-31
Query Start/End: Original strand, 142 - 282
Target Start/End: Original strand, 13453764 - 13453904
Alignment:
Q  142 tacctgcatctgttctggatcgcggcttactagaaacgagtctgctcctaagtgttccattgcttccttttcctttttaggcgacgtactaattacagtc 241  Q
    ||||| |||||| | |||||| ||||||| |||||| ||||| |||| ||||||||| | ||||||||||||||||||||| || ||||||||||| |||    
T  13453764 taccttcatctgctttggatcacggcttattagaaatgagtccgctcgtaagtgttctaatgcttccttttcctttttaggtgatgtactaattacggtc 13453863  T
Q  242 actttagcaccaaaagctttagcaaatttcacagccatatg 282  Q
    || |||||||| |||||||| || |||||||| ||||||||    
T  13453864 acattagcaccgaaagctttggcgaatttcacggccatatg 13453904  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 62; E-Value: 8e-27
Query Start/End: Original strand, 185 - 282
Target Start/End: Original strand, 13412958 - 13413055
Alignment:
Q  185 gctcctaagtgttccattgcttccttttcctttttaggcgacgtactaattacagtcactttagcaccaaaagctttagcaaatttcacagccatatg 282  Q
    |||||||||||||| |||||||||||||| || |||||||| ||||||||||| || || |||||||| |||||||| ||||||||||||||||||||    
T  13412958 gctcctaagtgttctattgcttccttttctttgttaggcgatgtactaattacggtaacattagcaccgaaagctttggcaaatttcacagccatatg 13413055  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 185 - 285
Target Start/End: Complemental strand, 13385623 - 13385523
Alignment:
Q  185 gctcctaagtgttccattgcttccttttcctttttaggcgacgtactaattacagtcactttagcaccaaaagctttagcaaatttcacagccatatgac 284  Q
    ||||||||||||||  ||||||||||||| ||  |||  || ||||||||||| ||||| ||||||||||||||||| ||||||||||||||||| ||||    
T  13385623 gctcctaagtgttcttttgcttccttttctttgctagcagatgtactaattacggtcacattagcaccaaaagctttggcaaatttcacagccatgtgac 13385524  T
Q  285 c 285  Q
    |    
T  13385523 c 13385523  T

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Target: chr5; HSP #7
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 179 - 285
Target Start/End: Original strand, 13373039 - 13373145
Alignment:
Q  179 gagtctgctcctaagtgttccattgcttccttttcctttttaggcgacgtactaattacagtcactttagcaccaaaagctttagcaaatttcacagcca 278  Q
    ||||| |||||||||||||| || |||||||| |  || ||||| || || || || || || || ||||||||||||||||| | ||||||||||||||    
T  13373039 gagtcagctcctaagtgttcaatggcttccttctttttgttaggagaagtgcttatcactgttacattagcaccaaaagctttggtaaatttcacagcca 13373138  T
Q  279 tatgacc 285  Q
    |||||||    
T  13373139 tatgacc 13373145  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 185 - 285
Target Start/End: Complemental strand, 13389444 - 13389344
Alignment:
Q  185 gctcctaagtgttccattgcttccttttcctttttaggcgacgtactaattacagtcactttagcaccaaaagctttagcaaatttcacagccatatgac 284  Q
    |||||||||||||| |||||||| || || || || || || |||||||| || || ||  | |||||||| ||||| ||||||||||||||||| ||||    
T  13389444 gctcctaagtgttctattgcttctttctctttgttgggtgatgtactaatcactgttacaatcgcaccaaatgctttggcaaatttcacagccatgtgac 13389345  T
Q  285 c 285  Q
    |    
T  13389344 c 13389344  T

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Target: chr4 (Bit Score: 47; Significance: 7e-18; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 179 - 285
Target Start/End: Original strand, 47601119 - 47601225
Alignment:
Q  179 gagtctgctcctaagtgttccattgcttccttttcctttttaggcgacgtactaattacagtcactttagcaccaaaagctttagcaaatttcacagcca 278  Q
    ||||| |||||||||  |||  ||||||| ||||| || ||||| || ||||||||||||||||| ||||| ||||||||||||||||| || |||||||    
T  47601119 gagtcagctcctaagcattctcttgcttctttttctttgttaggtgatgtactaattacagtcacattagccccaaaagctttagcaaacttaacagcca 47601218  T
Q  279 tatgacc 285  Q
    | |||||    
T  47601219 tgtgacc 47601225  T

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Target: chr8 (Bit Score: 37; Significance: 0.000000000006; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 245 - 285
Target Start/End: Complemental strand, 28430767 - 28430727
Alignment:
Q  245 ttagcaccaaaagctttagcaaatttcacagccatatgacc 285  Q
    ||||||||||||||||| |||||||||||||||||||||||    
T  28430767 ttagcaccaaaagctttggcaaatttcacagccatatgacc 28430727  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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