View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11888_low_32 (Length: 269)
Name: NF11888_low_32
Description: NF11888
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11888_low_32 |
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Alignment Details
Target: chr6 (Bit Score: 251; Significance: 1e-139; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 251; E-Value: 1e-139
Query Start/End: Original strand, 1 - 259
Target Start/End: Original strand, 4191806 - 4192064
Alignment:
| Q |
1 |
ttgagttaggcattctaactgtgactttccgttgtgatttctggtattttctcttcgcatctgatattgcattagcttctgagattataactcgtcattg |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |
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| T |
4191806 |
ttgagttaggcattctaactgtgactttccgttgtgatttctggtattttctcttcgcatctgatattgcattagcttctgagattataactcgtccttg |
4191905 |
T |
|
| Q |
101 |
gccagagtgttaatatttgaattttaactaaacttgtttttattagagctccagaagggattgttctatatttcaaaacatgaccaaggctctgaaacaa |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |
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| T |
4191906 |
gccagagtgttaatatttgaattttaactaaacttgtttttattagagctccagaagggattgttctatatttcaaaacatgactaaggctctgaaacaa |
4192005 |
T |
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| Q |
201 |
aactttcttaattttagacagcatgcttattcgcatattcattgtactgctgctctctg |
259 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4192006 |
aactttcttaattttagacagcatgcttattcgcatattcattgtactgctgctctctg |
4192064 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 247; Significance: 1e-137; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 247; E-Value: 1e-137
Query Start/End: Original strand, 1 - 259
Target Start/End: Original strand, 52211365 - 52211623
Alignment:
| Q |
1 |
ttgagttaggcattctaactgtgactttccgttgtgatttctggtattttctcttcgcatctgatattgcattagcttctgagattataactcgtcattg |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| ||| |
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| T |
52211365 |
ttgagttaggcattctaactgtgactttccgttgtgatttctggtattttctcttcgcatctgatattgcattagcttctgatattataactcgtctttg |
52211464 |
T |
|
| Q |
101 |
gccagagtgttaatatttgaattttaactaaacttgtttttattagagctccagaagggattgttctatatttcaaaacatgaccaaggctctgaaacaa |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |
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| T |
52211465 |
gccagagtgttaatatttgaattttaactaaacttgtttttattagagctccagaagggattgttctatatttcaaaacatgactaaggctctgaaacaa |
52211564 |
T |
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| Q |
201 |
aactttcttaattttagacagcatgcttattcgcatattcattgtactgctgctctctg |
259 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
52211565 |
aactttcttaattttagacagcatgcttattcgcatattcattgtactgctgctctctg |
52211623 |
T |
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