View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11888_low_34 (Length: 259)
Name: NF11888_low_34
Description: NF11888
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11888_low_34 |
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Alignment Details
Target: chr6 (Bit Score: 114; Significance: 7e-58; HSPs: 4)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 114; E-Value: 7e-58
Query Start/End: Original strand, 1 - 207
Target Start/End: Complemental strand, 30935079 - 30934863
Alignment:
| Q |
1 |
agtgtacgtgggtttctaatcccctttagattgaatctttggataatgagttgaaaatgttgaagtatttgattggaatcatgtgtatgtttgaaatatt |
100 |
Q |
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| T |
30935079 |
agtgtacgtgggtttcaaatcccgttcacattgaatcttttgagaatgaattgaaaatgtggaagtatttgattggaatcatgtgtatgtttgaaatctt |
30934980 |
T |
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| Q |
101 |
tagccaattgttgtagcttggtaggtgtgtttatgagcaagtatgt----------aacaatataagccctagtatgtatagaagttatttgtaacccgt |
190 |
Q |
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| T |
30934979 |
taaccaattgttgtagcttggtaggcgtgtttatgagcaagtatgtgtataatgtctacaatataatccctagtatatgtagaagctatttgtaacccat |
30934880 |
T |
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| Q |
191 |
gtgtactgtcacatcat |
207 |
Q |
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| T |
30934879 |
gtgtactgtcacatcat |
30934863 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 6 - 142
Target Start/End: Complemental strand, 30994010 - 30993874
Alignment:
| Q |
6 |
acgtgggtttctaatcccctttagattgaatctttgga-taatgagttgaaaatgttgaagtatttgattggaatcatgtgtatgtttgaaatatttagc |
104 |
Q |
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| T |
30994010 |
acgtgggttttaaatcacctttatattgaatctttagagtattga-tagaaaatgttgaggtatttgattggaatcatgtgtatgtttgaaatcattagc |
30993912 |
T |
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| Q |
105 |
caattgttgtagcttggtaggtgtgtttatgagcaagt |
142 |
Q |
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| T |
30993911 |
caattgttgtagcttgctaggtgtgtttaagagaaagt |
30993874 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 51 - 103
Target Start/End: Complemental strand, 25048662 - 25048610
Alignment:
| Q |
51 |
ttgaaaatgttgaagtatttgattggaatcatgtgtatgtttgaaatatttag |
103 |
Q |
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| T |
25048662 |
ttgaaaatgttgaagtatttcattgaaattatgtgtatgtttgaaatttttag |
25048610 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 60 - 119
Target Start/End: Complemental strand, 33927081 - 33927021
Alignment:
| Q |
60 |
ttgaagtatttgattggaatcatgtgtat-gtttgaaatatttagccaattgttgtagctt |
119 |
Q |
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| T |
33927081 |
ttgaagtatttgattggaatcatgtgtaacgtattagatctttagccaattgttgtggctt |
33927021 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 65; Significance: 1e-28; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 44 - 132
Target Start/End: Complemental strand, 41147738 - 41147650
Alignment:
| Q |
44 |
taatgagttgaaaatgttgaagtatttgattggaatcatgtgtatgtttgaaatatttagccaattgttgtagcttggtaggtgtgttt |
132 |
Q |
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| T |
41147738 |
taatgaattgaaaatgttgaagtgtttgattggaattatgtgtatgtttgaaatcttttaccaattgttgtagcttggtaggtgtgttt |
41147650 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 30; Significance: 0.00000009; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 66 - 103
Target Start/End: Original strand, 33485851 - 33485888
Alignment:
| Q |
66 |
tatttgattggaatcatgtgtatgtttgaaatatttag |
103 |
Q |
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| T |
33485851 |
tatttgattggaattatgtgtatgtttgaaatctttag |
33485888 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 31 - 75
Target Start/End: Original strand, 40006930 - 40006974
Alignment:
| Q |
31 |
ttgaatctttggataatgagttgaaaatgttgaagtatttgattg |
75 |
Q |
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| T |
40006930 |
ttgaatttttagataatgaattgaaaatgttgaggtatttgattg |
40006974 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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