View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11888_low_36 (Length: 259)
Name: NF11888_low_36
Description: NF11888
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11888_low_36 |
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Alignment Details
Target: chr8 (Bit Score: 181; Significance: 7e-98; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 181; E-Value: 7e-98
Query Start/End: Original strand, 11 - 241
Target Start/End: Original strand, 9588949 - 9589187
Alignment:
| Q |
11 |
cagagatggaaagttgggggctgctaatttaattgtttt-------caccatacttagtaatggacattttccatgctacagtcctagataagcagtgga |
103 |
Q |
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| T |
9588949 |
cagagatggaaagttgggggctgctaatttaattgttttcatttttcaccatacttagtaatggacattttccatgctagagtcctagataagcagtgga |
9589048 |
T |
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| Q |
104 |
agagctatgtatgctcactctaagatatgtgctttatcttggatgttgcttttcgatagattttcccttaata-tttttcctctttcggttaacccttgg |
202 |
Q |
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| T |
9589049 |
agagctatgtatgctcactctaagctatgtgctttatcttggatgttgcttttcgatagattttccattaatattttttcctctctcggttaacccttgg |
9589148 |
T |
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| Q |
203 |
gaaatgaacagtaataattcgaagtttagtcgtaacatg |
241 |
Q |
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| T |
9589149 |
gaaatgaacagtaataatttgaagttttgtcgtaacatg |
9589187 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 146 - 241
Target Start/End: Original strand, 9589426 - 9589522
Alignment:
| Q |
146 |
atgttgcttttcgatagattttccctta--atatttttcctctttcggttaacccttgggaaatgaacagtaataattcgaagtttagtcgtaacatg |
241 |
Q |
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| T |
9589426 |
atgttgcttttcgatagacttttcattaggatttttttcctctttcagttaacctttgg-aaatgaacagtaataattcgaagtttagtcgtaacatg |
9589522 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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