View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11888_low_4 (Length: 719)
Name: NF11888_low_4
Description: NF11888
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11888_low_4 |
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Alignment Details
Target: chr2 (Bit Score: 354; Significance: 0; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 354; E-Value: 0
Query Start/End: Original strand, 19 - 372
Target Start/End: Original strand, 11957430 - 11957783
Alignment:
| Q |
19 |
atccatttctccataacagaacacctccatctcaaaaactcttttctcttctcctcagtcccaaaagtcttttgataaatctcttcaccatcaaacacac |
118 |
Q |
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| T |
11957430 |
atccatttctccataacagaacacctccatctcaaaaactcttttctcttctcctcagtcccaaaagtcttttgataaatctcttcaccatcaaacacac |
11957529 |
T |
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| Q |
119 |
tatagatgttgtaacacacagggtgtccttcgcgatcaacaccgttcatataagcagcagaagccaaatcagaaccaaaatcttcttccaaaaccgaatc |
218 |
Q |
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| T |
11957530 |
tatagatgttgtaacacacagggtgtccttcgcgatcaacaccgttcatataagcagcagaagccaaatcagaaccaaaatcttcttccaaaaccgaatc |
11957629 |
T |
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| Q |
219 |
aatcttcatttccttcctccatttaagtgtcttcttcaacatctcaaatgcttcattcaccttaaactctctagctctcaaaaacttcaacaaaaccaca |
318 |
Q |
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| T |
11957630 |
aatcttcatttccttcctccatttaagtgtcttcttcaacatctcaaatgcttcattcaccttaaactctctagctctcaaaaacttcaacaaaaccaca |
11957729 |
T |
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| Q |
319 |
tcaactccttcatttcctttgcttggcaaaagtgacacaccccacaaagacaaa |
372 |
Q |
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| T |
11957730 |
tcaactccttcatttcctttgcttggcaaaagtgacacaccccacaaagacaaa |
11957783 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 264; E-Value: 1e-147
Query Start/End: Original strand, 448 - 711
Target Start/End: Original strand, 11957862 - 11958125
Alignment:
| Q |
448 |
ggtaaagtttcaacctttttggtctcttcttcctttttctcaaaaagggtgttccctaaaactgcttcttcaacctttgatctaaactcaatcaaagcct |
547 |
Q |
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| T |
11957862 |
ggtaaagtttcaacctttttggtctcttcttcctttttctcaaaaagggtgttccctaaaactgcttcttcaacctttgatctaaactcaatcaaagcct |
11957961 |
T |
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| Q |
548 |
ttttctcaaactctttgagatcagaaagaaagttactttcttccttataagatgaacatttctcaactgtctttgtgggttttgattcttccattgattc |
647 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
11957962 |
ttttctcaaactctttgagatcagaaagaaagttactttcttccttataagatgaacatttctcaactgtctttgtgggttttgattcttccattgattc |
11958061 |
T |
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| Q |
648 |
ctttgcttcaacgttttcttcaacaactttaccttcttcaacaacaacctcaactttctgtgct |
711 |
Q |
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| T |
11958062 |
ctttgcttcaacgttttcttcaacaactttaccttcttcaacaacaacctcaactttctgtgct |
11958125 |
T |
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