View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11888_low_5 (Length: 699)
Name: NF11888_low_5
Description: NF11888
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11888_low_5 |
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Alignment Details
Target: chr7 (Bit Score: 213; Significance: 1e-116; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 213; E-Value: 1e-116
Query Start/End: Original strand, 349 - 691
Target Start/End: Original strand, 19111821 - 19112155
Alignment:
| Q |
349 |
gttaactaatcagagatcaaatttccttatataataatatacccttccaaagtttgaatgctggatatcaaaacaactnnnnnnncttcgaagctttcgc |
448 |
Q |
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| T |
19111821 |
gttaactaatcagagatgaaatttccttagataataatatactctt--------tgaatgttgaataccaaaacatctaaaaacacttcgaagctttcgc |
19111912 |
T |
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| Q |
449 |
ttaatattaagacatatatagttaagtaaataaaaagaaatgaaatttgagttcaaatcaacacctcaagattttttctttggcttctgtcaaatccttg |
548 |
Q |
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| T |
19111913 |
ttaatattaagacatatatagttaagtaaataaaaacaaatgaaatttgagttcaaatcaatacctcaagattttttctttggcttctttcaaattcttg |
19112012 |
T |
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| Q |
549 |
ctatcaatcttcaattcatcataactttgcaggatttcttggtagataccaagtctcttcctttcaccgacaacagaatcagtagcagaagaagtctccg |
648 |
Q |
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| T |
19112013 |
ctatcaatcttcaatgcatcataactttgcaggatttcttggtaaataccaagtcgcttcctttcaccgataacagaatcagcagcagaagaagtcgcca |
19112112 |
T |
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| Q |
649 |
cactttcttcactaactactccgaaatccaattcattcttctc |
691 |
Q |
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| T |
19112113 |
cactttcttcactaacttctccgaaatctaattcattcttctc |
19112155 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 185; E-Value: 1e-100
Query Start/End: Original strand, 19 - 290
Target Start/End: Original strand, 19111489 - 19111763
Alignment:
| Q |
19 |
aagcattcactgtggaatagagtcagttgcgtaaatatgaagcatcaaaactaacaactatctaggatctgttttttattattctgctttcacttccccc |
118 |
Q |
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| T |
19111489 |
aagcattcactgtggaacagagtcggtagcgaaaaaatgaagcatcaaaactaacaactatctagggtctattttttattgttctgctttcatttccccc |
19111588 |
T |
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| Q |
119 |
tgtaacactattttcatgacaaaaataggaaaaaa---tgttcccatagctgatgaattgtttgaaatcattttttacataaaccaaggaaaataaacaa |
215 |
Q |
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| T |
19111589 |
tgtaatactattttaatgacaaaaattggaaaaaaaaatattcccatagatgatgaattgtttgaaagcattttttacataaaccaaggcaaataaacaa |
19111688 |
T |
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| Q |
216 |
cctgaaattcatgcttttgacttgagtccttaattcattttttcaattagttttaaaacgaagaaaaagtatatg |
290 |
Q |
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| T |
19111689 |
cctgaaattcatgcttttgacttgagtccttaattcatttctacaattagttttaaaacgaagaaaaagtttatg |
19111763 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 99; E-Value: 2e-48
Query Start/End: Original strand, 453 - 623
Target Start/End: Original strand, 19119014 - 19119184
Alignment:
| Q |
453 |
tattaagacatatatagttaagtaaataaaaagaaatgaaatttgagttcaaatcaacacctcaagattttttctttggcttctgtcaaatccttgctat |
552 |
Q |
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|||||| |||||||| ||||||||||||||| ||||||| | || | ||||||||| ||||||||||||||||||| || | | ||||| |||||| |
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| T |
19119014 |
tattaaaacatatatgtttaagtaaataaaaataaatgaagtctgtgctcaaatcaatacctcaagattttttctttcgcctgtttcaaactaatgctat |
19119113 |
T |
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| Q |
553 |
caatcttcaattcatcataactttgcaggatttcttggtagataccaagtctcttcctttcaccgacaaca |
623 |
Q |
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| T |
19119114 |
caatcttcaattcatcataactttgcaggatttcttggtagatactaagtctcttcctttcaccgacaaca |
19119184 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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