View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11888_low_6 (Length: 587)
Name: NF11888_low_6
Description: NF11888
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11888_low_6 |
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| [»] scaffold0041 (2 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 551; Significance: 0; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 551; E-Value: 0
Query Start/End: Original strand, 11 - 569
Target Start/End: Complemental strand, 21716529 - 21715971
Alignment:
| Q |
11 |
cagagatgaccataaaacagaataataacaaagcaagatagatatccgaagaagcataaaaattgagtcccttatgtaaagatgtgtgcaacatattact |
110 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
21716529 |
cagagatgaccataaaacagaataataacaaagcaagatagatatccgaagaagcataaaaattgagtcccttatgtaaagatgtgtgcaacatattact |
21716430 |
T |
|
| Q |
111 |
ccaaatcataactaaaaaacaatacctgaagaaggcgccaaggagagttaggccaacgaataggatcaacaacctgaacggaagcgattgttcccataaa |
210 |
Q |
| |
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||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |
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| T |
21716429 |
ccaaatcctaactaaaaaacaatacctgaagaaggcgccaaggagagttaggccaacgaataggatcaacaacctgaacagaagcgattgttcccataaa |
21716330 |
T |
|
| Q |
211 |
ccaactaatcctagaagagtcttcagtttcaaagggcatcttgaacctcatcccagaacaccattgaatcctcatagcagccttcacagctgaagcctta |
310 |
Q |
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|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
21716329 |
ccaactaatcctagaagagtcttcagtttcaaagggcatcttgaacctcatcccagaacaccattgaatcctcatagcagccttcacagctgaagcctta |
21716230 |
T |
|
| Q |
311 |
acacagaactcaggagtgctagctcttggatagtaaacaacttcaaatggttggttgttagcagccaatttcacagcttccataacatcttcagccctca |
410 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
21716229 |
acacagaactcaggagtgctagctcttggatagtaaacaacttcaaatggttggttgttagcagccaatttcacagcttccataacatcttcagccctca |
21716130 |
T |
|
| Q |
411 |
ctctcactcttccactcaaattaccatcaaaacaaccatttctcaatgtcttattctcttctttcaagaaaaaagaaaatgccccaaaaggtccaattcc |
510 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
21716129 |
ctctcactcttccactcaaattaccatcaaaacaaccatttctcaatgtcttattctcttctttcaagaaaaaagaaaatgccccaaaaggtccaattcc |
21716030 |
T |
|
| Q |
511 |
acaatttacattgttagaaccagaacctgaagtccatccacaagatgaaccatcaaaac |
569 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
21716029 |
acaatttacattgttagaaccagaacctgaagtccatccacaagatgaaccatcaaaac |
21715971 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 133 - 189
Target Start/End: Complemental strand, 51743155 - 51743099
Alignment:
| Q |
133 |
tacctgaagaaggcgccaaggagagttaggccaacgaataggatcaacaacctgaac |
189 |
Q |
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|||||||||||| | ||||| || |||||||| ||||||||||||||||||||||| |
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| T |
51743155 |
tacctgaagaagtctccaagaggaattaggccaccgaataggatcaacaacctgaac |
51743099 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 209 - 291
Target Start/End: Complemental strand, 51742244 - 51742165
Alignment:
| Q |
209 |
aaccaactaatcctagaagagtcttcagtttcaaagggcatcttgaacctcatcccagaacaccattgaatcctcatagcagc |
291 |
Q |
| |
|
||||||||||| |||||||| || ||||||| || |||||||| ||| ||| ||||||||||||||||| ||||||||||| |
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| T |
51742244 |
aaccaactaatactagaagaatcctcagttt--aatggcatcttaaac-tcacaccagaacaccattgaattctcatagcagc |
51742165 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 121; Significance: 1e-61; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 121; E-Value: 1e-61
Query Start/End: Original strand, 133 - 425
Target Start/End: Original strand, 40352030 - 40352322
Alignment:
| Q |
133 |
tacctgaagaaggcgccaaggagagttaggccaacgaataggatcaacaacctgaacggaagcgattgttcccataaaccaactaatcctagaagagtct |
232 |
Q |
| |
|
|||||||||||| | |||||| || |||||||||||||||||||||||||| ||||| |||| || |||||||| |||||||||||||||||||| ||| |
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| T |
40352030 |
tacctgaagaagtctccaaggggaattaggccaacgaataggatcaacaacttgaacagaagaaatagttcccatgaaccaactaatcctagaagaatct |
40352129 |
T |
|
| Q |
233 |
tcagtttcaaagggcatcttgaacctcatcccagaacaccattgaatcctcatagcagccttcacagctgaagccttaacacagaactcaggagtgctag |
332 |
Q |
| |
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|| ||||| || |||||||| |||||||||||||||||||||||||| ||||||||||| || |||||||||| ||||| ||| ||||||||||| || | |
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| T |
40352130 |
tcggtttcgaatggcatcttaaacctcatcccagaacaccattgaattctcatagcagctttaacagctgaagtcttaatacaaaactcaggagtacttg |
40352229 |
T |
|
| Q |
333 |
ctcttggatagtaaacaacttcaaatggttggttgttagcagccaatttcacagcttccataacatcttcagccctcactctcactcttccac |
425 |
Q |
| |
|
|||| ||||| ||||| || ||||||| ||| || ||||||| | | ||| ||||||| | || |||| | |||||| |||||||||||| |
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|
| T |
40352230 |
ctctaggataataaactacctcaaatgtttgattactagcagcaagtctcatagcttccttcactgattcaccactcactttcactcttccac |
40352322 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 89; Significance: 1e-42; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 89; E-Value: 1e-42
Query Start/End: Original strand, 133 - 357
Target Start/End: Complemental strand, 42730877 - 42730653
Alignment:
| Q |
133 |
tacctgaagaaggcgccaaggagagttaggccaacgaataggatcaacaacctgaacggaagcgattgttcccataaaccaactaatcctagaagagtct |
232 |
Q |
| |
|
|||||||||||||||||||||||| | |||||||||||| ||||| ||| ||||| |||| || ||||||||||||||||||||||||||||| || |
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|
| T |
42730877 |
tacctgaagaaggcgccaaggagaatcaggccaacgaattggatcttgaacatgaacagaagaaatagttcccataaaccaactaatcctagaagaatcc |
42730778 |
T |
|
| Q |
233 |
tcagtttcaaagggcatcttgaacctcatcccagaacaccattgaatcctcatagcagccttcacagctgaagccttaacacagaactcaggagtgctag |
332 |
Q |
| |
|
||||||||||| ||||| ||||| ||||| ||||||||||||||||| ||| |||| || || | ||| |||||||||| || |||||||| |||| |
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| T |
42730777 |
tcagtttcaaaaggcattttgaatctcataccagaacaccattgaatttgcattgcagatttaactgaagaaaccttaacacaaaattcaggagtactag |
42730678 |
T |
|
| Q |
333 |
ctcttggatagtaaacaacttcaaa |
357 |
Q |
| |
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|||||||||| || ||||| ||||| |
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| T |
42730677 |
ctcttggataatacacaacctcaaa |
42730653 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 201 - 280
Target Start/End: Complemental strand, 28347416 - 28347337
Alignment:
| Q |
201 |
ttcccataaaccaactaatcctagaagagtcttcagtttcaaagggcatcttgaacctcatcccagaacaccattgaatc |
280 |
Q |
| |
|
|||||||||||||||| || | ||| || || || |||||||||| ||||||||| || || |||||||||||| ||||| |
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|
| T |
28347416 |
ttcccataaaccaacttattcgagacgaatcctcggtttcaaaggccatcttgaatcttattccagaacaccatcgaatc |
28347337 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0041 (Bit Score: 38; Significance: 0.000000000004; HSPs: 2)
Name: scaffold0041
Description:
Target: scaffold0041; HSP #1
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 200 - 273
Target Start/End: Complemental strand, 96429 - 96356
Alignment:
| Q |
200 |
gttcccataaaccaactaatcctagaagagtcttcagtttcaaagggcatcttgaacctcatcccagaacacca |
273 |
Q |
| |
|
||||| ||||||||||| ||||| || ||||| || ||||||| |||||||||||||||||| |||| |||||| |
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|
| T |
96429 |
gttccgataaaccaacttatccttgatgagtcctcggtttcaatgggcatcttgaacctcattccaggacacca |
96356 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0041; HSP #2
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 173 - 273
Target Start/End: Complemental strand, 88448 - 88348
Alignment:
| Q |
173 |
ggatcaacaacctgaacggaagcgattgttcccataaaccaactaatcctagaagagtcttcagtttcaaagggcatcttgaacctcatcccagaacacc |
272 |
Q |
| |
|
|||||| || ||||||| ||||| | ||||| ||||||||||| ||||| || ||||| || ||||||| || ||||||||||||||| |||| ||||| |
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| T |
88448 |
ggatcagcagcctgaacagaagcaacagttccgataaaccaacttatccttgatgagtcctcggtttcaatggccatcttgaacctcattccaggacacc |
88349 |
T |
|
| Q |
273 |
a |
273 |
Q |
| |
|
| |
|
|
| T |
88348 |
a |
88348 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 38; Significance: 0.000000000004; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 200 - 273
Target Start/End: Original strand, 40869853 - 40869926
Alignment:
| Q |
200 |
gttcccataaaccaactaatcctagaagagtcttcagtttcaaagggcatcttgaacctcatcccagaacacca |
273 |
Q |
| |
|
||||| ||||||||||| ||||| || ||||| || ||||||| |||||||||||||||||| |||| |||||| |
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|
| T |
40869853 |
gttccgataaaccaacttatccttgatgagtcctcggtttcaatgggcatcttgaacctcattccaggacacca |
40869926 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 173 - 273
Target Start/End: Original strand, 40877835 - 40877935
Alignment:
| Q |
173 |
ggatcaacaacctgaacggaagcgattgttcccataaaccaactaatcctagaagagtcttcagtttcaaagggcatcttgaacctcatcccagaacacc |
272 |
Q |
| |
|
|||||| || ||||||| ||||| | ||||| ||||||||||| ||||| || ||||| || ||||||| || ||||||||||||||| |||| ||||| |
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| T |
40877835 |
ggatcagcagcctgaacagaagcaacagttccgataaaccaacttatccttgatgagtcctcggtttcaatggccatcttgaacctcattccaggacacc |
40877934 |
T |
|
| Q |
273 |
a |
273 |
Q |
| |
|
| |
|
|
| T |
40877935 |
a |
40877935 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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