View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11888_low_8 (Length: 508)
Name: NF11888_low_8
Description: NF11888
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11888_low_8 |
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| [»] chr5 (2 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 253; Significance: 1e-140; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 253; E-Value: 1e-140
Query Start/End: Original strand, 174 - 508
Target Start/End: Original strand, 14442600 - 14442931
Alignment:
| Q |
174 |
gtttaatgttgttaggttgacattctaaaacgactttacgcataaccaatcaaaacattgagaattacatcggtaaaaaattacaataaccataactaat |
273 |
Q |
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| T |
14442600 |
gtttaatgttgttaggttgacattccaaaacgactttacgcataaccaatcaaaacattcagaattacattggtaaaaaattacaataaccataactaat |
14442699 |
T |
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| Q |
274 |
tacacattcaaaagaatactttattagtccccttaaaaaattaaatgaaaaataacagattacgtacataaatgtgtatcagttacgtacttaatgtgtt |
373 |
Q |
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| T |
14442700 |
tacacattcaaaagaatactttattagtccacttaaaaaattaaatgaaaaataacagattacgtacataaatgtctatcagttacgtacttaatgtgtt |
14442799 |
T |
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| Q |
374 |
atactaatacattattcttttaaatgtgtannnnnnnnnnnnnnnnnnngtggtaattaattcgtttgtaaaagaatttggtagtgtcacataacaccgc |
473 |
Q |
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| T |
14442800 |
atactaatacattattcttttaaatgtgta---attattattattattagtggtaattaattcgtttgtaaaagaatttggtagtgtcacataacaccgc |
14442896 |
T |
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| Q |
474 |
cttgcgaaaatttcaaaactaaatacaaagatcgc |
508 |
Q |
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| T |
14442897 |
cttgcgaaaatttcaaaactaaatacaaagatcgc |
14442931 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 89; E-Value: 1e-42
Query Start/End: Original strand, 17 - 113
Target Start/End: Original strand, 14442443 - 14442539
Alignment:
| Q |
17 |
caggattgtgttactaggattgatgttttgtataacagagcagatcagtgaccacaaacatacgacaacacatgttgactagtggacattattttca |
113 |
Q |
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| T |
14442443 |
caggattgtgttactaggattgatgttttgtctaacagaccagatcagtgaccacaaacatacgacaacacatgttgactagtggacattattttca |
14442539 |
T |
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