View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF11889_high_1 (Length: 906)
Name: NF11889_high_1
Description: NF11889
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11889_high_1 |
 | |
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Alignment Details
Target: chr1 (Bit Score: 853; Significance: 0; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 853; E-Value: 0
Query Start/End: Original strand, 17 - 896
Target Start/End: Complemental strand, 31830831 - 31829954
Alignment:
| Q |
17 |
agtattcataccatgctggagttctcctcttttgttttgagtgtatatcatcgcctgtgtatctgtccgaattgtttgaatacttatatgtgggagggaa |
116 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
31830831 |
agtattcataccatgctggagttctcctcttttgttttgagtgtatatcatcgcctgtgtatctgtccgaattgtttgaatacttatatgtgggagggaa |
31830732 |
T |
|
| Q |
117 |
gtatatttgcccctcattccatccttcaaagacacgaccttgttcccgctcaatatgcaactgaaagtaaaattaatcgaagctcagatactttgagaca |
216 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |
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| T |
31830731 |
gtatatttgcccctcattccatccttcaaagacacgaccttgttcccgctcaatatgcaactgaaagtaaaattaatcgaagctcagatact--gagaca |
31830634 |
T |
|
| Q |
217 |
agaaacaaaagctctggcatattgtaagagtacaaagtatcatacctggtcattctctaacaataccttccaattatgcatctcaacaagagcttttgct |
316 |
Q |
| |
|
||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
31830633 |
agaaacaaaagctatggcatattgtaagagtacaaagtatcatacctggtcattctctaacaataccttccaattatgcatctcaacaagagcttttgct |
31830534 |
T |
|
| Q |
317 |
gcacggtaagtaagggctatccgataatttaaatctcccagccaaattattcgactataccaattaaaccaagaattttatcagccttgcaatctccgag |
416 |
Q |
| |
|
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |
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| T |
31830533 |
gcacggtaagtaagggcaatccgataatttaaatctcccagccaaattattcgactataccaattaaaccaagaattttattagccttgcaatctccgag |
31830434 |
T |
|
| Q |
417 |
catcataggaatggaaaagattgaaggaagagatgaaaggcttactcatggtccagaatagtctgaggtgagctctcatcgccaatgccgttaacccggg |
516 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
31830433 |
catcataggaatggaaaagattgaaggaagagatgaaaggcttactcatggtccagaatagtctgaggtgagctctcatcgccaatgccgttaacccggg |
31830334 |
T |
|
| Q |
517 |
gaaaccttgtctttctgagaatctccattacatctgagtttctccttaactcatccccctccttttgtccggaagtcaaatgactgcatatgaagcaaaa |
616 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
31830333 |
gaaaccttgtctttctgagaatctccattacatctgagtttctccttaactcatccccctccttttgtccggaagtcaaatgactgcatatgaagcaaaa |
31830234 |
T |
|
| Q |
617 |
gctcgttttgtgcaaagacatgctaattgatattgaaccctgaaaagcataagaaaatgagattgaatcctctagtttcattttaaacccccttcttcaa |
716 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
31830233 |
gctcgttttgtgcaaagacatgctaattgatattgaaccctgaaaagcataagaaaatgagattgaatcctctagtttcattttaaacccccttcttcaa |
31830134 |
T |
|
| Q |
717 |
agaatttgatcaaatttaccttgtttccgaggtatcccatcaaccctctgccaacgcaagacactttcatattgcgaacatcatctctaatattgctttt |
816 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
31830133 |
agaatttgatcaaatttaccttgtttccgaggtatcccatcaaacctctgccaacgcaagacactttcatattgcgaacatcatctctaatattgctttt |
31830034 |
T |
|
| Q |
817 |
cacccaaactgttagaaatatcccaaccatttgcttactagcaaccaaacaatatctcgagttctctgtctgtctatctc |
896 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
31830033 |
cacccaaactgttagaaatatcccaaccatttgcttactagcaaccaaacaatatctcgagttctctgtctgtctatctc |
31829954 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 51; E-Value: 1e-19
Query Start/End: Original strand, 516 - 646
Target Start/End: Complemental strand, 46764930 - 46764800
Alignment:
| Q |
516 |
ggaaaccttgtctttctgagaatctccattacatctgagtttctccttaactcatccccctccttttgtccggaagtcaaatgactgcatatgaagcaaa |
615 |
Q |
| |
|
||||||||||||||| | ||||||||||| ||||| || ||||| |||| ||||| ||||| || ||||| || || ||||||||||| || ||||||| |
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| T |
46764930 |
ggaaaccttgtctttttaagaatctccataacatcagaatttcttcttagttcatcaccctctttctgtcctgaggttaaatgactgcaaataaagcaaa |
46764831 |
T |
|
| Q |
616 |
agctcgttttgtgcaaagacatgctaattga |
646 |
Q |
| |
|
|||| |||| ||||| |||||| |||||||| |
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|
| T |
46764830 |
agcttgtttcgtgcacagacatactaattga |
46764800 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 124; Significance: 3e-63; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 124; E-Value: 3e-63
Query Start/End: Original strand, 516 - 879
Target Start/End: Original strand, 38122225 - 38122593
Alignment:
| Q |
516 |
ggaaaccttgtctttctgagaatctccattacatctgagtttctccttaactcatccccctccttttgtccggaagtcaaatgactgcatatgaagcaaa |
615 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||| |||||||| | ||| || || ||| |||||||||||||||||||||| || | |||||||| |
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|
| T |
38122225 |
ggaaaccttgtctttctgagaatctccattacatctgaatttctcctaagctcgtcaccatccctttgtccggaagtcaaatgactacagacgaagcaaa |
38122324 |
T |
|
| Q |
616 |
agctcgttttgtgcaaagacatgctaattgatattgaaccctgaa-aagcataagaaaatgagattgaatcct------ctagtttcattttaaaccccc |
708 |
Q |
| |
|
| ||||||| | |||| ||||| |||||||||||||||||||| | || ||||||||||||||| || | ||||| |||| ||||| | |
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|
| T |
38122325 |
aactcgtttggcgcaatgacatactaattgatattgaaccctgcagaaatccaagaaaatgagattgtctctttcaagcctagta-cattataaactcta |
38122423 |
T |
|
| Q |
709 |
ttcttcaaagaatttgatcaaatttaccttgtttccgaggtatcccatcaaccctctgccaacgcaagacactttcatattgcgaacatcatctctaata |
808 |
Q |
| |
|
| || ||| || || | ||||| |||||||||||| || ||||||||||| ||||| ||||| |||||||||||||| || |||| |||||||| ||| |
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|
| T |
38122424 |
ctgttaaaataaatt-agcaaatgtaccttgtttccaagatatcccatcaatcctcttccaacacaagacactttcatgttatgaacgtcatctctgata |
38122522 |
T |
|
| Q |
809 |
ttgcttttcacccaaactgttagaaatatcccaaccatttgcttactagcaaccaaacaatatctcgagtt |
879 |
Q |
| |
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| ||||||||||||||||||||||||| ||| |||||||||||||||||||||||||| ||||||||||| |
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|
| T |
38122523 |
tcacttttcacccaaactgttagaaatacccctaccatttgcttactagcaaccaaacagtatctcgagtt |
38122593 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 71; E-Value: 1e-31
Query Start/End: Original strand, 261 - 387
Target Start/End: Original strand, 38121840 - 38121966
Alignment:
| Q |
261 |
cctggtcattctctaacaataccttccaattatgcatctcaacaagagcttttgctgcacggtaagtaagggctatccgataatttaaatctcccagcca |
360 |
Q |
| |
|
|||||||||||| |||||| |||||||| |||||| |||||||||||||||||| ||||||||| ||| |||||||| ||||||||||| |||||||| |
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|
| T |
38121840 |
cctggtcattctttaacaaagtcttccaatcatgcatttcaacaagagcttttgctccacggtaagaaagtgctatccggtaatttaaatcccccagcca |
38121939 |
T |
|
| Q |
361 |
aattattcgactataccaattaaacca |
387 |
Q |
| |
|
||||||||| ||| ||||| ||||||| |
|
|
| T |
38121940 |
aattattcggctacaccaaataaacca |
38121966 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 58; E-Value: 6e-24
Query Start/End: Original strand, 25 - 158
Target Start/End: Original strand, 38121609 - 38121742
Alignment:
| Q |
25 |
taccatgctggagttctcctcttttgttttgagtgtatatcatcgcctgtgtatctgtccgaattgtttgaatacttatatgtgggagggaagtatattt |
124 |
Q |
| |
|
||||||||||||||||| ||||||||||||||| || ||||||| |||| || || || ||||||||||||||||||||||| ||||| || ||||||| |
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|
| T |
38121609 |
taccatgctggagttcttctcttttgttttgagcgtctatcatcacctgcataactatctgaattgtttgaatacttatatgtaggaggaaaatatattt |
38121708 |
T |
|
| Q |
125 |
gcccctcattccatccttcaaagacacgaccttg |
158 |
Q |
| |
|
||| ||| ||||||| ||||||||| ||||| |
|
|
| T |
38121709 |
tcccttcactccatccggtaaagacacggccttg |
38121742 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 42; Significance: 0.00000000000002; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 259 - 372
Target Start/End: Complemental strand, 1085735 - 1085622
Alignment:
| Q |
259 |
tacctggtcattctctaacaataccttccaattatgcatctcaacaagagcttttgctgcacggtaagtaagggctatccgataatttaaatctcccagc |
358 |
Q |
| |
|
|||||||||||||||||||||| | |||| || |||||||||| ||| || || || | |||||| | |||||||| ||||||||||||||||| ||| |
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|
| T |
1085735 |
tacctggtcattctctaacaatgctctccagttttgcatctcaataagcgccttcgcagaacggtagttgagggctattcgataatttaaatctccaagc |
1085636 |
T |
|
| Q |
359 |
caaattattcgact |
372 |
Q |
| |
|
|| || |||||||| |
|
|
| T |
1085635 |
catataattcgact |
1085622 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 516 - 646
Target Start/End: Complemental strand, 1085385 - 1085255
Alignment:
| Q |
516 |
ggaaaccttgtctttctgagaatctccattacatctgagtttctccttaactcatccccctccttttgtccggaagtcaaatgactgcatatgaagcaaa |
615 |
Q |
| |
|
||||||||||||||| | |||||||||| |||||| |||||||| |||| ||||| || || || ||||| || || ||||| || || || ||||| | |
|
|
| T |
1085385 |
ggaaaccttgtctttttaagaatctccaatacatcagagtttcttcttagttcatcaccttctttctgtcctgaggttaaatggctacaaataaagcaga |
1085286 |
T |
|
| Q |
616 |
agctcgttttgtgcaaagacatgctaattga |
646 |
Q |
| |
|
|||| |||| |||| ||||||||||||||| |
|
|
| T |
1085285 |
agcttgtttcatgcagagacatgctaattga |
1085255 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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