View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11889_high_7 (Length: 204)
Name: NF11889_high_7
Description: NF11889
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11889_high_7 |
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Alignment Details
Target: chr2 (Bit Score: 188; Significance: 1e-102; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 188; E-Value: 1e-102
Query Start/End: Original strand, 1 - 192
Target Start/End: Complemental strand, 8719722 - 8719531
Alignment:
| Q |
1 |
cagaaacagctggtgcactttgggacatattccgaagagaagatactgcaaagttagaagcatatcttagaagacattccaaagaatttaggcatactta |
100 |
Q |
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| T |
8719722 |
cagaaacagctggtgcactttgggacatattccgaagagaagatactgcaaagttagaaacatatcttagaagacattccaaagaatttaggcatactta |
8719623 |
T |
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| Q |
101 |
ttgttctccagtaaaagaggtattatactatcacatatatttaacatttttacttatctttatttttacatgtttgagtctcactaacttct |
192 |
Q |
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| T |
8719622 |
ttgttctccagtaaaagaggtattatactatcacatatatttaacatttttacttatctttatttttacatgtttgagtctcactaacttct |
8719531 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 135; E-Value: 1e-70
Query Start/End: Original strand, 2 - 192
Target Start/End: Complemental strand, 8673428 - 8673238
Alignment:
| Q |
2 |
agaaacagctggtgcactttgggacatattccgaagagaagatactgcaaagttagaagcatatcttagaagacattccaaagaatttaggcatacttat |
101 |
Q |
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| T |
8673428 |
agaaacaactggtgcactttgggacatattccgaagagaagatactgcaaagttagaagcatatcttagaaaatattccaaagaatttaggcatacttgt |
8673329 |
T |
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| Q |
102 |
tgttctccagtaaaagaggtattatactatcacatatatttaacatttttacttatctttatttttacatgtttgagtctcactaacttct |
192 |
Q |
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| T |
8673328 |
tgttctccagtaaaagaggtattatattatcacatttcatcaatatttccgcttatatttatttttacatgtttgagtctcactaacttct |
8673238 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 70; E-Value: 9e-32
Query Start/End: Original strand, 3 - 132
Target Start/End: Complemental strand, 8591877 - 8591748
Alignment:
| Q |
3 |
gaaacagctggtgcactttgggacatattccgaagagaagatactgcaaagttagaagcatatcttagaagacattccaaagaatttaggcatacttatt |
102 |
Q |
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| T |
8591877 |
gaaacagctggtgctctttgggacatatttaaaagagaagatactgcaaagttagaagcatatcttcaaaaacattgcaaagaatttaggcatacttttt |
8591778 |
T |
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| Q |
103 |
gttctccagtaaaagaggtattatactatc |
132 |
Q |
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||||| ||| || |||||||||| |||| |
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| T |
8591777 |
tctctccggtagaaaaggtattatattatc |
8591748 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 136; Significance: 4e-71; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 136; E-Value: 4e-71
Query Start/End: Original strand, 1 - 192
Target Start/End: Original strand, 23439465 - 23439656
Alignment:
| Q |
1 |
cagaaacagctggtgcactttgggacatattccgaagagaagatactgcaaagttagaagcatatcttagaagacattccaaagaatttaggcatactta |
100 |
Q |
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||||||||||| ||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| | ||||||||||||||||||||||||| |
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| T |
23439465 |
cagaaacagctagtgcactttgggacatatttcgaagagaagatactgcaaagttagaagcatatcttagaaaatattccaaagaatttaggcatactta |
23439564 |
T |
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| Q |
101 |
ttgttctccagtaaaagaggtattatactatcacatatatttaacatttttacttatctttatttttacatgtttgagtctcactaacttct |
192 |
Q |
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||||||||||||||||||||||||||| |||||||| | | ||| ||| ||||| |||||||||||||||||||||||||||||||||| |
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| T |
23439565 |
ttgttctccagtaaaagaggtattatattatcacatttcatcaacgtttccgcttatatttatttttacatgtttgagtctcactaacttct |
23439656 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 42; Significance: 0.000000000000005; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 21 - 106
Target Start/End: Complemental strand, 55410510 - 55410425
Alignment:
| Q |
21 |
tgggacatattccgaagagaagatactgcaaagttagaagcatatcttagaagacattccaaagaatttaggcatacttattgttc |
106 |
Q |
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| T |
55410510 |
tgggatatatttcggagagaggacactgaaaagttaggagcatatcttagaaaacactcgaaagaattcaggcatacttattgttc |
55410425 |
T |
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