View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11889_low_2 (Length: 694)
Name: NF11889_low_2
Description: NF11889
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11889_low_2 |
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Alignment Details
Target: chr8 (Bit Score: 498; Significance: 0; HSPs: 7)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 498; E-Value: 0
Query Start/End: Original strand, 18 - 684
Target Start/End: Original strand, 32636015 - 32636682
Alignment:
| Q |
18 |
tcaatccacatgatg-cacaacatatgcggttttgtggtatgatccacaaagttgcaaacagataatggaagcagttgaagaaacaaaactcattaatga |
116 |
Q |
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||||||||||||||| |||| ||| || ||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |||||||||| |
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| T |
32636015 |
tcaatccacatgatgtcacatcatgtg--gttttgtggtatgatccacgaagttgcaaacagataatggaagcagttgaagaaacaaaattcattaatga |
32636112 |
T |
|
| Q |
117 |
tgtgagcatcaattacaatccaaagcttacatttagattctttattgaagaaacccaatgtaatgaagaaatgatagtagagtgtggttttcactggatg |
216 |
Q |
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||||| |||||||||||||||||||||||| ||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |
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| T |
32636113 |
tgtgatcatcaattacaatccaaagcttacttttagattctttattgaagaaacccaacgtaatgaagaaatgatagtagagtgtggttttcactggata |
32636212 |
T |
|
| Q |
217 |
tatcactttgaagccagtgcaattcaaaatagaactgaggatatcaaatccaatgatcaagaatatacagttcctccaacaaacaagt--gagcagtgtg |
314 |
Q |
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|||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |
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| T |
32636213 |
tatccctttgaagccagtgcaattcaaaatagaactgaggatatcaaatccaatgatcaagaatatacagttcctccaacaaacaagtgagagcagtgtg |
32636312 |
T |
|
| Q |
315 |
tcgttgaaactctgtccagtttatgaagtagatgaaacagaagatttttgaggtaatgttcctagcactcgttttagtaatgtaacttggaaactaaatt |
414 |
Q |
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||||||||||| ||||||| |||||||||| ||||||||||||| |||||||||||||||||||||||||| ||||||||||||||||||||||||| |
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| T |
32636313 |
tcgttgaaactttgtccaggttatgaagtaaatgaaacagaaga--cttgaggtaatgttcctagcactcgttgcagtaatgtaacttggaaactaaatt |
32636410 |
T |
|
| Q |
415 |
tagtttacacactcttccatgttctgctactgcaaataaccctgcctacggacaggtattcactcgaacaacttttgcatattggatttgatggagacct |
514 |
Q |
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| T |
32636411 |
tagtttacacactcttccattttctgctactgcaaataaccctgcctacagacaggtattcactcgaacgacttttgcatattggatttgatggagacct |
32636510 |
T |
|
| Q |
515 |
gtggcttcctgaagaatcaaggaagtcctagacgcgtggcttcctcttgaagcaagagaagtaaggagctatgtttgtttccatttcttagaatttagct |
614 |
Q |
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||||||||| |||||||||||||||||||||||| |||||||| ||||||||||||| |||||||||| |||||||||||||| ||||| | |||||||| |
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| T |
32636511 |
gtggcttccagaagaatcaaggaagtcctagacgtgtggcttcttcttgaagcaagataagtaaggagttatgtttgtttccaattctt-ggatttagct |
32636609 |
T |
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| Q |
615 |
catttgatgttctaactaaattcgttatttc---ctaatgagttatatacaattcattggaattttgcctatg |
684 |
Q |
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||||||||||||||||||||||||||||||| |||||||||||| |||||||||||||||||||| |||| |
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| T |
32636610 |
catttgatgttctaactaaattcgttatttcaatataatgagttatacacaattcattggaattttgcttatg |
32636682 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 58; E-Value: 5e-24
Query Start/End: Original strand, 52 - 168
Target Start/End: Complemental strand, 6307667 - 6307548
Alignment:
| Q |
52 |
tggtatgatccacaaagttgcaaacagataatggaagcagttgaagaaacaaaactcattaatgatgtg---agcatcaattacaatccaaagcttacat |
148 |
Q |
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|||||||||| | ||||||||| |||||||||| |||||||||||||| |||| ||||||||||||| |||| | || ||||||||||||||||| |
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| T |
6307667 |
tggtatgatcaagcaagttgcaagcagataatggcagcagttgaagaaataaaatccattaatgatgtgaacagcactagttgcaatccaaagcttacat |
6307568 |
T |
|
| Q |
149 |
ttagattctttattgaagaa |
168 |
Q |
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|||||||||||||||||||| |
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| T |
6307567 |
ttagattctttattgaagaa |
6307548 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 50; E-Value: 3e-19
Query Start/End: Original strand, 45 - 221
Target Start/End: Original strand, 5554172 - 5554351
Alignment:
| Q |
45 |
ggttttgtggtatgatccacaaagttgcaaacagataatggaagcagttgaagaaacaaaactcattaatgatgtgagcatcaa---ttacaatccaaag |
141 |
Q |
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|||||| |||||||||||| |||||||||| ||||||||||| ||||||||| ||| |||| |||||| ||| |||| || || |||| |||||||| |
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| T |
5554172 |
ggttttatggtatgatccagaaagttgcaagcagataatggatgcagttgaacaaataaaagtcattactgacgtgaacaacaccagttacgatccaaag |
5554271 |
T |
|
| Q |
142 |
cttacatttagattctttattgaagaaacccaatgtaatgaagaaatgatagtagagtgtggttttcactggatgtatca |
221 |
Q |
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| T |
5554272 |
cttacgtttacattctttattaatgaaactctatatgatgaagtagaaataaaagagtgtggatttcactggatttatca |
5554351 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 52 - 221
Target Start/End: Complemental strand, 5604668 - 5604496
Alignment:
| Q |
52 |
tggtatgatccacaaagttgcaaacagataatggaagcagttgaagaaacaaaactcattaatgatgtgagcatcaa---ttacaatccaaagcttacat |
148 |
Q |
| |
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||||||||||| ||||||||| ||||||||||| ||||||||| |||||||| ||||| ||||| || || || ||||| |||||||||||||| |
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| T |
5604668 |
tggtatgatcctagaagttgcaagcagataatggatgcagttgaacaaacaaaagccattagtgatgggaacagcacgagttacactccaaagcttacat |
5604569 |
T |
|
| Q |
149 |
ttagattctttattgaagaaacccaatgtaatgaagaaatgatagtagagtgtggttttcactggatgtatca |
221 |
Q |
| |
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||| |||||||||||| ||||| | || | |||||| | |||| ||||||||| |||| |||||| ||||| |
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| T |
5604568 |
ttacattctttattgatgaaactctatatgatgaagtagagataaaagagtgtgggtttcgctggatatatca |
5604496 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 52 - 221
Target Start/End: Original strand, 5630702 - 5630874
Alignment:
| Q |
52 |
tggtatgatccacaaagttgcaaacagataatggaagcagttgaagaaacaaaactcattaatgatgtgagcatcaa---ttacaatccaaagcttacat |
148 |
Q |
| |
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||||||||||| ||||||||| ||||||||||| ||||||||| |||||||| ||||| ||||| || || || ||||| |||||||||||||| |
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| T |
5630702 |
tggtatgatcctagaagttgcaagcagataatggatgcagttgaacaaacaaaagccattagtgatgggaacagcacgagttacactccaaagcttacat |
5630801 |
T |
|
| Q |
149 |
ttagattctttattgaagaaacccaatgtaatgaagaaatgatagtagagtgtggttttcactggatgtatca |
221 |
Q |
| |
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||| |||||||||||| ||||| | || | |||||| | |||| ||||||||| |||| |||||| ||||| |
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| T |
5630802 |
ttacattctttattgatgaaactctatatgatgaagtagagataaaagagtgtgggtttcgctggatatatca |
5630874 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #6
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 66 - 219
Target Start/End: Original strand, 13167921 - 13168077
Alignment:
| Q |
66 |
aagttgcaaacagataatggaagcagttgaagaaacaaaactcattaatgatgtgagcatc---aattacaatccaaagcttacatttagattctttatt |
162 |
Q |
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||||||||| || |||||||||||| ||||||||| |||| | ||||||||||| || | | |||||||||||||||||||||||||||||||||| |
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| T |
13167921 |
aagttgcaagcaaataatggaagcatttgaagaaataaaagccgataatgatgtgaacaacactagttacaatccaaagcttacatttagattctttatt |
13168020 |
T |
|
| Q |
163 |
gaagaaacccaatgtaatgaagaaatgatagtagagtgtggttttcactggatgtat |
219 |
Q |
| |
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| T |
13168021 |
catgaaaatatatacgatgaagtagtgataaaagagtgtgggtttcactggatgtat |
13168077 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #7
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 77 - 170
Target Start/End: Complemental strand, 9862271 - 9862175
Alignment:
| Q |
77 |
agataatggaagcagttgaagaaacaaaactcattaatgatgtgagcatcaat---tacaatccaaagcttacatttagattctttattgaagaaac |
170 |
Q |
| |
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||||||| ||| ||||| ||||||||||| | |||||||||||| || | | ||||||||||||||||||||||||||||||||||| ||||| |
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| T |
9862271 |
agataatagaaacagttaaagaaacaaaagtagttaatgatgtgaacagaactagttacaatccaaagcttacatttagattctttattgatgaaac |
9862175 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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