View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11889_low_5 (Length: 327)
Name: NF11889_low_5
Description: NF11889
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11889_low_5 |
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Alignment Details
Target: chr6 (Bit Score: 95; Significance: 2e-46; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 95; E-Value: 2e-46
Query Start/End: Original strand, 15 - 125
Target Start/End: Complemental strand, 26911201 - 26911091
Alignment:
| Q |
15 |
atgaatccatcatggcaacaaggaaaactcagggaattctgcatgaagaaaggaattcatgtatgtgcatggtcaccattgggagcatacaaagtatttt |
114 |
Q |
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| T |
26911201 |
atgaatccatcttggcatcaagaaaaactcagggaattctgcatgaagaaaggaattcatgtgtgtgcatggtcaccattgggagcatacaaagtatttt |
26911102 |
T |
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| Q |
115 |
ggggttctaat |
125 |
Q |
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| T |
26911101 |
ggggttctaat |
26911091 |
T |
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Target: chr6; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 155 - 191
Target Start/End: Complemental strand, 26911093 - 26911057
Alignment:
| Q |
155 |
aattgctgaggctagaaagaagagtgtggctcaggtg |
191 |
Q |
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| T |
26911093 |
aattgctgaggctagaaataagagtgtagctcaggtg |
26911057 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 72; Significance: 1e-32; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 12 - 191
Target Start/End: Original strand, 27429320 - 27429499
Alignment:
| Q |
12 |
gagatgaatccatcatggcaacaaggaaaactcagggaattctgcatgaagaaaggaattcatgtatgtgcatggtcaccattgggagcatacaaagtat |
111 |
Q |
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| T |
27429320 |
gagatgaacccatcatggcaacaggggaaactaagagaattctgcaagcagaaaggaatccatgtgagtgcatggtcaccactaggaggatacaaactaa |
27429419 |
T |
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| Q |
112 |
tttggggttctaatgctgtgatggagaatcctattcttcaggaaattgctgaggctagaaagaagagtgtggctcaggtg |
191 |
Q |
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| T |
27429420 |
gttggggttcgcctacagtgatggagaatccaattctgcacgaaattgcagaggctagaaagaagagtgtagcccaggtg |
27429499 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 22 - 191
Target Start/End: Original strand, 27443597 - 27443766
Alignment:
| Q |
22 |
catcatggcaacaaggaaaactcagggaattctgcatgaagaaaggaattcatgtatgtgcatggtcaccattgggagcatacaaagtattttggggttc |
121 |
Q |
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| T |
27443597 |
catcatggcatcaggggaaactcagagaattctgcaagcagaaaggaattcatgtgagtgcatggtcaccactaggaggatacaaactaagttttggttc |
27443696 |
T |
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| Q |
122 |
taatgctgtgatggagaatcctattcttcaggaaattgctgaggctagaaagaagagtgtggctcaggtg |
191 |
Q |
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| T |
27443697 |
gcctgcagtgatggagaattcaattctgcgagaaattgctgaggctagaaagaaaagtgtagcccaggtg |
27443766 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 52; E-Value: 8e-21
Query Start/End: Original strand, 22 - 212
Target Start/End: Original strand, 27440779 - 27440970
Alignment:
| Q |
22 |
catcatggcaacaaggaaaactcagggaattctgcatgaagaaaggaattcatgtatgtgcatggtcaccattgggagcatacaaagtattttggggttc |
121 |
Q |
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|||||||||| || || ||||| || |||||||||| | |||||||||| ||||| |||||||||||||| | |||| |||||| || ||||||||| |
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| T |
27440779 |
catcatggcatcaggggaaacttagagaattctgcaagcagaaaggaatccatgtgagtgcatggtcaccactaggaggctacaaactaagttggggttc |
27440878 |
T |
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| Q |
122 |
taatgctgtgatggagaatcctattcttcaggaaattgctgaggctagaaagaagagtgtggctcaggtggaattgatt-ttatatttcaaa |
212 |
Q |
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||| |||||||||||| ||||| | |||||||||||||||||||||||||||| || |||||| | |||||| || ||||||||| |
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| T |
27440879 |
gcctgcagtgatggagaatttgattctgcgcaaaattgctgaggctagaaagaagagtgtagcccaggtgcagttgattattttatttcaaa |
27440970 |
T |
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