View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11890_high_11 (Length: 367)
Name: NF11890_high_11
Description: NF11890
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11890_high_11 |
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Alignment Details
Target: chr4 (Bit Score: 336; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 336; E-Value: 0
Query Start/End: Original strand, 15 - 350
Target Start/End: Complemental strand, 55605260 - 55604925
Alignment:
| Q |
15 |
atgaacctccaaacgcttcaaagactcaaacttttcaccattcaccctacaatgatcagccaaaactcgaagaaacacgtacaaaccactacacaaaaca |
114 |
Q |
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| T |
55605260 |
atgaacctccaaacgcttcaaagactcaaacttttcaccattcaccctacaatgatcagccaaaactcgaagaaacacgtacaaaccactacacaaaaca |
55605161 |
T |
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| Q |
115 |
tgtggcatttcttctaataaacaatcccatttatctaataaaagtgtcaccaacttctcacaaagccataaattatcatcactgaaatcaccaccaacaa |
214 |
Q |
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| T |
55605160 |
tgtggcatttcttctaataaacaatcccatttatctaataaaagtgtcaccaacttctcacaaagccataaattatcatcactgaaatcaccaccaacaa |
55605061 |
T |
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| Q |
215 |
tttgtctcaaaagggatatcaataaagcatcatagccaatccccgagacttgaatcatttcatcggtgacccaaataagttgatgtttcaccgaaccaag |
314 |
Q |
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| T |
55605060 |
tttgtctcaaaagggatatcaataaagcatcatagccaatccccgagacttgaatcatttcatcggtgacccaaataagttgatgtttcaccgaaccaag |
55604961 |
T |
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| Q |
315 |
aagtttggggtagaggtggtggacgatattgaagag |
350 |
Q |
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| T |
55604960 |
aagtttggggtagaggtggtggacgatattgaagag |
55604925 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 95; Significance: 2e-46; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 95; E-Value: 2e-46
Query Start/End: Original strand, 160 - 346
Target Start/End: Complemental strand, 44801034 - 44800848
Alignment:
| Q |
160 |
gtcaccaacttctcacaaagccataaattatcatcactgaaatcaccaccaacaatttgtctcaaaagggatatcaataaagcatcatagccaatccccg |
259 |
Q |
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| T |
44801034 |
gtcaccattttctcacaaagccacaaattatcatcactgaaatcgctaccaataatttgtctcaaaagggaaatcaataaagcaatgtagccaatccaag |
44800935 |
T |
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| Q |
260 |
agacttgaatcatttcatcggtgacccaaataagttgatgtttcaccgaaccaagaagtttggggtagaggtggtggacgatattga |
346 |
Q |
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| T |
44800934 |
agactcgaatcatttcgtcagtgacccagataagttgatgtttcacggacccaagatgttttaggtatagttggtggacgatattga |
44800848 |
T |
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