View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11890_high_6 (Length: 459)
Name: NF11890_high_6
Description: NF11890
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11890_high_6 |
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Alignment Details
Target: chr4 (Bit Score: 116; Significance: 8e-59; HSPs: 4)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 116; E-Value: 8e-59
Query Start/End: Original strand, 11 - 142
Target Start/End: Original strand, 30970233 - 30970364
Alignment:
| Q |
11 |
tgagctgaacaatttgtataaagacccaagaatcacattccacaagaagggaaataataccctgatcacaaaaggttttaagaccatattcaagagacct |
110 |
Q |
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| T |
30970233 |
tgagttgaacaatttgtataaagacccaagaatcacattccacaagaagggaaataataccctgatcccaaaaggttttaagaccatattaaagagacct |
30970332 |
T |
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| Q |
111 |
caaagctcaacataaatagcagtggaggtttt |
142 |
Q |
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| T |
30970333 |
caaagctcaacataaatagcggtggaggtttt |
30970364 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 95; E-Value: 3e-46
Query Start/End: Original strand, 171 - 418
Target Start/End: Original strand, 30970598 - 30970845
Alignment:
| Q |
171 |
gatttttaaatttgtgatatttgttttctcaatttaaattgatagatannnnnnnnnnctcaacnnnnnnn-gttgtgagattgttttctcnnnnnnntc |
269 |
Q |
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| T |
30970598 |
gatttttaaatttgtgatatttgttttctcaatttaaattgatagatatattttttttctcaacaagaaaaagttgtgagattgttttctcaaaaaaatc |
30970697 |
T |
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| Q |
270 |
gactgagatctcattttctgaatttnnnnnnnntatttaataagtannnnnnngtcaatttaaattgatagtaaacatcttatggaatatgttcataaaa |
369 |
Q |
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| T |
30970698 |
gactgagatctcattttctgaattttaaaaaaatatttaataagtatttttt-gtcaatttaaattgatagtaaacatcttatggaataagttcataaaa |
30970796 |
T |
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| Q |
370 |
aataaacttggagattcattctttcaaggtataaaactaactctataac |
418 |
Q |
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| T |
30970797 |
agtaaactcgaagattcattctttcaaagtataaaattaactctataac |
30970845 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 126 - 182
Target Start/End: Original strand, 30970536 - 30970593
Alignment:
| Q |
126 |
atagcagtggaggttttaa-attacaacacaaaattcttattatgggatttttaaatt |
182 |
Q |
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| T |
30970536 |
ataggagtggaggttttaatattacaacacaagattcttattatgggatttttaaatt |
30970593 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 402 - 441
Target Start/End: Original strand, 30971055 - 30971094
Alignment:
| Q |
402 |
aaaactaactctataactaatacttatgtgatcataactt |
441 |
Q |
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| T |
30971055 |
aaaattaactctataactaatacttatgtgatcttaactt |
30971094 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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