View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11890_low_17 (Length: 266)
Name: NF11890_low_17
Description: NF11890
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11890_low_17 |
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Alignment Details
Target: chr2 (Bit Score: 210; Significance: 1e-115; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 210; E-Value: 1e-115
Query Start/End: Original strand, 3 - 248
Target Start/End: Original strand, 17836091 - 17836336
Alignment:
| Q |
3 |
agcaaagttgcgggaaaaagatcagctgaaaaaggtgtttcagagctgacggcttatgagttggatggcgatgaatttgccacaaaattagtcaaactga |
102 |
Q |
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| T |
17836091 |
agcaaagttgcggggaaaagatcggctgaaaaaggtgtttcagagctgatggcttatgagttggatggcgatgaatctgccacaaaatcagtcaaactga |
17836190 |
T |
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| Q |
103 |
aaagtgtgaagcttgagcccaaagattaagaatagtgtcatgttgcagtccgtttcatcaattattttaaaaattgtttggatgttatggtttatttctt |
202 |
Q |
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| T |
17836191 |
aaagtgtgaagcttgagcccaaatattaagaatagtgtcatgttgcagtccgtttcatcaattattttaaaaattgtttgaatgttatggtttatttctt |
17836290 |
T |
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| Q |
203 |
cggtattgtttttgtttcttgaagtactattggttagtgttacttt |
248 |
Q |
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| T |
17836291 |
ccgtattgtttttgtttcttgaagtactattggttcgtgttacttt |
17836336 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 57; Significance: 7e-24; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 57; E-Value: 7e-24
Query Start/End: Original strand, 1 - 153
Target Start/End: Original strand, 4094282 - 4094434
Alignment:
| Q |
1 |
gcagcaaagttgcgggaaaaagatcagctgaaaaaggtgtttcagagctgacggcttatgagttggatggcgatgaatttgccacaaaattagtcaaact |
100 |
Q |
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|||||||||||| | |||||||||||||| |||||||||||||| ||||| |||||| |||||||||| || |||| ||| ||||||| ||||| || |
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| T |
4094282 |
gcagcaaagttgtttgtaaaagatcagctgagaaaggtgtttcagatctgacagcttataagttggatggggacgaatctgcaacaaaatctgtcaagct |
4094381 |
T |
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| Q |
101 |
gaaaagtgtgaagcttgagcccaaagattaagaatagtgtcatgttgcagtcc |
153 |
Q |
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| T |
4094382 |
gaagtgtgtgaagcttgagcctaaaaattaggatgagcgtcatgatgcagtcc |
4094434 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 1 - 153
Target Start/End: Original strand, 4438794 - 4438946
Alignment:
| Q |
1 |
gcagcaaagttgcgggaaaaagatcagctgaaaaaggtgtttcagagctgacggcttatgagttggatggcgatgaatttgccacaaaattagtcaaact |
100 |
Q |
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|||||||||||| | |||||||||||||| |||||||||||||| |||| |||||| |||||||||| || |||| ||||||| ||| |||| || |
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| T |
4438794 |
gcagcaaagttgtatggaaaagatcagctgagaaaggtgtttcagatgtgacagcttataagttggatggggacgaatctgccacagaatctatcaagct |
4438893 |
T |
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| Q |
101 |
gaaaagtgtgaagcttgagcccaaagattaagaatagtgtcatgttgcagtcc |
153 |
Q |
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||| |||||||||||||||| ||| |||| || ||||||||| |||||||| |
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| T |
4438894 |
gaagtgtgtgaagcttgagcctaaaaattaggatgagtgtcatgatgcagtcc |
4438946 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 57; Significance: 7e-24; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 57; E-Value: 7e-24
Query Start/End: Original strand, 1 - 153
Target Start/End: Complemental strand, 37715581 - 37715429
Alignment:
| Q |
1 |
gcagcaaagttgcgggaaaaagatcagctgaaaaaggtgtttcagagctgacggcttatgagttggatggcgatgaatttgccacaaaattagtcaaact |
100 |
Q |
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|||||||||||| | |||||||||||||| |||||||||||||| |||| |||||| |||||||||| || |||| ||||||||||| |||| || |
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| T |
37715581 |
gcagcaaagttgtatggaaaagatcagctgagaaaggtgtttcagatgtgacagcttataagttggatggggacgaatctgccacaaaatctatcaagct |
37715482 |
T |
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| Q |
101 |
gaaaagtgtgaagcttgagcccaaagattaagaatagtgtcatgttgcagtcc |
153 |
Q |
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||| |||||||||||||||| ||| |||| || ||||||||| |||||||| |
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| T |
37715481 |
gaagtgtgtgaagcttgagcctaaaaattaggatgagtgtcatgatgcagtcc |
37715429 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 57; Significance: 7e-24; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 57; E-Value: 7e-24
Query Start/End: Original strand, 1 - 153
Target Start/End: Complemental strand, 46592044 - 46591892
Alignment:
| Q |
1 |
gcagcaaagttgcgggaaaaagatcagctgaaaaaggtgtttcagagctgacggcttatgagttggatggcgatgaatttgccacaaaattagtcaaact |
100 |
Q |
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|||||||||||| | |||||||||||||| |||||||||||||| |||| |||||| |||||||||| || |||| ||||||| ||| ||||||| |
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| T |
46592044 |
gcagcaaagttgtatggaaaagatcagctgagaaaggtgtttcagatgtgacagcttataagttggatggggacgaatctgccacagaatctatcaaact |
46591945 |
T |
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| Q |
101 |
gaaaagtgtgaagcttgagcccaaagattaagaatagtgtcatgttgcagtcc |
153 |
Q |
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||| |||||||||||||||| ||| |||| || ||||||||| |||||||| |
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| T |
46591944 |
gaagtgtgtgaagcttgagcctaaaaattaggatgagtgtcatgatgcagtcc |
46591892 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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