View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11890_low_2 (Length: 678)
Name: NF11890_low_2
Description: NF11890
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11890_low_2 |
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Alignment Details
Target: chr1 (Bit Score: 370; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 370; E-Value: 0
Query Start/End: Original strand, 19 - 465
Target Start/End: Original strand, 18408572 - 18409016
Alignment:
| Q |
19 |
atggccgtaaaccatcacatttgcttcaattcctttttgcaactgaaatacacaaacttagttcaacttatgnnnnnnngtttgtttgaagaattcaact |
118 |
Q |
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| T |
18408572 |
atggccgtaaaccatcacatttgcttcaattcctttttgcaactgaaatacacaaacttagttcaacttatttttttt--tttgtttgaagaattcaact |
18408669 |
T |
|
| Q |
119 |
tatgataaagatataagtttatgactcttatgaagaccttgttagtttgttctccaataacaaaaatacctttgtctggtgaaattgttcctgtaatgtg |
218 |
Q |
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| T |
18408670 |
tatgataaagatataagtttatgactcttataaagaccttgttagtttgttatccaataacaaaaatacctttgtctagtgaaattgttcctgtaatgtg |
18408769 |
T |
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| Q |
219 |
tgacataaatcactcttattttaaagaaacattgtattattttcgtgcaggagtagcatcggtagagccggatttgaagaactcgctagtaatactgaga |
318 |
Q |
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| T |
18408770 |
tgacataaatcactcttattttaaagaaacattgtattattttcgtgcaggaatagcatcagtagagccggatttgaagaactcgctagtgatactgaga |
18408869 |
T |
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| Q |
319 |
aattaattagtggaatgtgtgtacaggagggatgggaaacaagcagtaatagtgaaccaagctggtggacctgaaggatcacaatcagaggcgaagacac |
418 |
Q |
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|||||||||||||||||||||||||||||||||||| |||||||||| |||||||||||||||||| |||||||||||||||||| |||||||||||||| |
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| T |
18408870 |
aattaattagtggaatgtgtgtacaggagggatgggcaacaagcagtgatagtgaaccaagctggtagacctgaaggatcacaattagaggcgaagacac |
18408969 |
T |
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| Q |
419 |
gattcgacgactggagttgccaagggagagaaagtgagataaaccaa |
465 |
Q |
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|||| |||||||||||||||||||||||||||||||||||||||||| |
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| T |
18408970 |
gattagacgactggagttgccaagggagagaaagtgagataaaccaa |
18409016 |
T |
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