View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11890_low_21 (Length: 239)
Name: NF11890_low_21
Description: NF11890
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11890_low_21 |
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Alignment Details
Target: chr7 (Bit Score: 197; Significance: 1e-107; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 197; E-Value: 1e-107
Query Start/End: Original strand, 22 - 222
Target Start/End: Complemental strand, 47422450 - 47422250
Alignment:
| Q |
22 |
gtaccatcatgttcatcctttcaatctcttgttttttccatgtttcctctctatcaagcttttcttgatctcttttgagcatgtcttcaagtagcttatt |
121 |
Q |
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| T |
47422450 |
gtaccatcatgttcatcctttcaatctcttgttttttccatgtttcctctctatcaagcttttcttgatctcttttgagcatgtcttcaagtagcttatt |
47422351 |
T |
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| Q |
122 |
gtgtatttcttcttgttgtgctattattttgttaaccactgtctcacaaaaactcttcaacatttcaaatctatcacggcgcctcttcctctttttgttc |
221 |
Q |
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| T |
47422350 |
gtgtatttcttcttgttgtgctattattttattaaccactgtctcacaaaaactcttcaacatttcaaatctatcacggcgcctcttcctctttttgttc |
47422251 |
T |
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| Q |
222 |
t |
222 |
Q |
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| T |
47422250 |
t |
47422250 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 41; Significance: 0.00000000000002; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 45 - 197
Target Start/End: Original strand, 36127974 - 36128126
Alignment:
| Q |
45 |
atctcttgttttttccatgtttcctctctatcaagcttttcttgatctcttttgagcatgtcttcaagtagcttattgtgtatttcttcttgttgtgcta |
144 |
Q |
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| T |
36127974 |
atctcttgtttcttccaagcttcttctctactaaacttctcttcatctcttttaaccatatcttcaataagcttgttgtgcatttcttcttgttgatcca |
36128073 |
T |
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| Q |
145 |
ttattttgttaaccactgtctcacaaaaactcttcaacatttcaaatctatca |
197 |
Q |
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| T |
36128074 |
tcattttctttacaacactctcacaaaaacccttaaacacttcaaatctatca |
36128126 |
T |
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