View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11890_low_24 (Length: 205)
Name: NF11890_low_24
Description: NF11890
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11890_low_24 |
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Alignment Details
Target: chr8 (Bit Score: 145; Significance: 2e-76; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 145; E-Value: 2e-76
Query Start/End: Original strand, 14 - 183
Target Start/End: Original strand, 593410 - 593579
Alignment:
| Q |
14 |
gcacagatcaccacaggtatttccagtaaccaccaaacagaataaagcattaaatgcacatgtggcttttgaagtaaggaaaaaagatcaactgaagtac |
113 |
Q |
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| T |
593410 |
gcaccgatcaccacaggtatttccagtaaccaccaaacagaataaagcattaaatgcacatgtggcttttgaagtaaggaaaaaagatcaactgaagtac |
593509 |
T |
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| Q |
114 |
acaaaacatcaatnnnnnnntatggatccataccaactaccgagtttctaacaaaaaacaagggtctgac |
183 |
Q |
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||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
593510 |
acaaaacatcaataaaaaaatatggatccataccaactaccgagtttctaacaaaaaacaagggtctgac |
593579 |
T |
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Target: chr8; HSP #2
Raw Score: 96; E-Value: 3e-47
Query Start/End: Original strand, 15 - 183
Target Start/End: Complemental strand, 579010 - 578849
Alignment:
| Q |
15 |
cacagatcaccacaggtatttccagtaaccaccaaacagaataaagcattaaatgcacatgtggcttttgaagtaaggaaaaaagatcaactgaagtaca |
114 |
Q |
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|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |||||| ||||||| |||| ||||||||| |
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| T |
579010 |
cacagatcaccacaggtatttccaataaccaccaaacagaataaagcattaaatgcacatgtggcctttgaa------aaaaaaggtcaattgaagtaca |
578917 |
T |
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| Q |
115 |
caaaacatcaatnnnnnnntatggatccataccaactaccgagtttctaacaaaaaacaagggtctgac |
183 |
Q |
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||||||| |||| |||||||||||||||||||| ||||||||||||||||||||||||||||| |
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| T |
578916 |
caaaacagcaat-aaaaaatatggatccataccaactactgagtttctaacaaaaaacaagggtctgac |
578849 |
T |
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