View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11890_low_3 (Length: 638)
Name: NF11890_low_3
Description: NF11890
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11890_low_3 |
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| [»] chr4 (3 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 236; Significance: 1e-130; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 236; E-Value: 1e-130
Query Start/End: Original strand, 395 - 638
Target Start/End: Complemental strand, 42509269 - 42509026
Alignment:
| Q |
395 |
tagaaagaaaaatatgtataatttcccttgcaatccatgctggcacttggcatgatcttgttggccacttactgtcggtgatttgcttataaaactaaaa |
494 |
Q |
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| T |
42509269 |
tagaaagaaaaatatgtataatttcccttgcaatccatactggcacttggcatgatcttgttggccacttactgtcggtgatttgcttataaaactaaaa |
42509170 |
T |
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| Q |
495 |
gtgtaaaactttaacgtggttcaaatatcaattttcgtacggatgaaattcccttttcttcaccattgcatcgctgttagtatgttactatgtccgaaaa |
594 |
Q |
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| T |
42509169 |
gtgtaaaactttaacgtggttcaaatatcaattttcgtacggatgaaattcccttttcttcaccattgcattgctgttagtatgttactatgtccgaaaa |
42509070 |
T |
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| Q |
595 |
ctacaggcaacggacaaggttgtttggtcttaaacgatgcaact |
638 |
Q |
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| T |
42509069 |
ctacaggcaacggacaaggttgtttggtcttaaacgatgcaact |
42509026 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 117; E-Value: 3e-59
Query Start/End: Original strand, 125 - 313
Target Start/End: Complemental strand, 42509712 - 42509524
Alignment:
| Q |
125 |
atacctttctttgaacaaattctcataaaacaatatctnnnnnnnngtttttataaaataaaatgaaagaataatttgataannnnnnnngtttgtccca |
224 |
Q |
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| T |
42509712 |
atacctttcttagaacaaattctcatataacaatctctgaaaaaaagtttttataaaataaaatgaaagaataatttgataattttttttgtttgtccca |
42509613 |
T |
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| Q |
225 |
tgccaaacataatcattcttttgtcttcttcgaacgatgggccaagaacaagttgatttattccaattttatcatcacactgtatctca |
313 |
Q |
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| T |
42509612 |
tgccaaacataatcatctttttgtcttcttcgaactatgggccaagaacaagttgatttattccaattttatcatcacactgtatctca |
42509524 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 89; E-Value: 1e-42
Query Start/End: Original strand, 18 - 126
Target Start/End: Complemental strand, 42509845 - 42509737
Alignment:
| Q |
18 |
tttaagtctcaaatttcctcatccaatcatcaaagtttagtttgcagttatccttacgagatttgaacttaatccttatcaatcgagcgaacctatatta |
117 |
Q |
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| T |
42509845 |
tttaaatctcaaacttgctcatccaaccatcaaagtttagtttgcagttatccttacgagatttgaacttaatccttatcaatcgagcgaacctatatta |
42509746 |
T |
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| Q |
118 |
gctcataat |
126 |
Q |
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| T |
42509745 |
gttcataat |
42509737 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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