View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11890_low_4 (Length: 595)
Name: NF11890_low_4
Description: NF11890
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11890_low_4 |
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Alignment Details
Target: chr6 (Bit Score: 541; Significance: 0; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 541; E-Value: 0
Query Start/End: Original strand, 11 - 579
Target Start/End: Complemental strand, 34706545 - 34705976
Alignment:
| Q |
11 |
agaacgacaatcaatctgagacaaagggagtgcttctgaaattcattaacaacaaaataatttttagattgtgaactgtgcataacctaaaaacgacaat |
110 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34706545 |
agaacgacaatcaatctgagacaaagggagtgcttctgaaattcattaacaacaaaataatttttagattgtgaactgtgcataacctaaaaacgacaat |
34706446 |
T |
|
| Q |
111 |
caatctgagacgaagggagtgttcaaatgcttgagaatttacttataccctcaatttactttttcaatcaaaatgaaattacaaattgaaatatattcag |
210 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34706445 |
caatctgagacgaagggagtgttcaaatgcttgagaatttacttataccctcaatttactttttcaatcaaaatgaaattacaaattgaaatatattcag |
34706346 |
T |
|
| Q |
211 |
cttacatttgaaccatttatatatcattttagaatataaaacctgaacttatattaacctcaatttcccaaaacatcatgctatatatgttaagaattta |
310 |
Q |
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| T |
34706345 |
cttacatttgaaccatttatatatcattttagaatataaaacctgaacttatattaacctcaatttcccaaaacatcatgctatatatgttaagaattta |
34706246 |
T |
|
| Q |
311 |
gttgacagtggacgccaacaacattaagtaagggactaacttagagaaaaaagagaatatgaattcaaagatgaaaatttgctac-nnnnnnngtagaat |
409 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |
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| T |
34706245 |
gttgacagtggacgccaacaacattaagtaagggactaacttagagaaaaaagagaatatgaattcaaagatgaaaatttgctacttttttttgtagaat |
34706146 |
T |
|
| Q |
410 |
ttgcaggtagcagtcaacttgcacctacctgcatagttttccttaaatctatagcaattataaataggacctttgattctatgcatatagaaaagtagat |
509 |
Q |
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| T |
34706145 |
ttgcaggtagcagtcaacttgcacctacctgcatagttttccttaaatctatagcaattataaataggacctttgattctatgcatatagaaaagtagat |
34706046 |
T |
|
| Q |
510 |
gttttacgtcactcaaacatacgatattcaaagaaaaaacagtaccctgcattttatcatataaagttgt |
579 |
Q |
| |
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| T |
34706045 |
gttttacgtcactcaaacatacgatattcaaagaaaaaacagtaccctgcattttatcatataaagttgt |
34705976 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 51; E-Value: 6e-20
Query Start/End: Original strand, 57 - 131
Target Start/End: Complemental strand, 34706588 - 34706514
Alignment:
| Q |
57 |
taacaacaaaataatttttagattgtgaactgtgcataacctaaaaacgacaatcaatctgagacgaagggagtg |
131 |
Q |
| |
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||||||||||| || |||||||||||||| ||||||||||||| |||||||||||||||||||| ||||||||| |
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| T |
34706588 |
taacaacaaaagaaattttagattgtgaatcgtgcataacctaagaacgacaatcaatctgagacaaagggagtg |
34706514 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 392; Significance: 0; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 392; E-Value: 0
Query Start/End: Original strand, 11 - 579
Target Start/End: Complemental strand, 4358674 - 4358102
Alignment:
| Q |
11 |
agaacgacaatcaatctgagacaaagggagtgcttctgaaattcattaacaacaaaataatttttagattgtgaactgtgcataacctaaaaacgacaat |
110 |
Q |
| |
|
|||||||||||||||||||||| ||||||||||| || |||| ||||||||||||| || ||||||||| ||||| ||||||||||||| ||||||||| |
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| T |
4358674 |
agaacgacaatcaatctgagacgaagggagtgct-ctagaatttattaacaacaaaagaagttttagattatgaaccgtgcataacctaagaacgacaat |
4358576 |
T |
|
| Q |
111 |
caatctgagacgaagggagtg-ttcaaatgcttgagaatttacttataccctcaatttactttttcaatcaaaatgaaattacaaattgaaatatattca |
209 |
Q |
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| ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||| |||||||| |
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| T |
4358575 |
ccatctgagacgaagggagtgcttcaaatgcttgagaatttacttataccctcaatttactttttcaatcaaaatgaaatttcaaatagaagtatattca |
4358476 |
T |
|
| Q |
210 |
gcttacatttgaaccatttatatatcattttagaatataaaacctgaacttatattaacctcaatttcccaaaacatcatgctatatatgttaagaattt |
309 |
Q |
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|||||||||||||||||| |||||||||||||||||||||||| ||||||||||||||||||||||| ||||||||||||||||||||||| ||||||| |
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| T |
4358475 |
gcttacatttgaaccattaatatatcattttagaatataaaacttgaacttatattaacctcaattttccaaaacatcatgctatatatgtgaagaattg |
4358376 |
T |
|
| Q |
310 |
agttgacagtggacgccaacaacattaagtaagggactaacttagagaaaaaagagaatatgaattcaaagatgaaaatttgctac----nnnnnnngta |
405 |
Q |
| |
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|| |||||| ||||||||||||||||||||||||||||||||||||||||| ||| ||||||| |||||||||||||| ||||| | ||| |
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| T |
4358375 |
agctgacaggggacgccaacaacattaagtaagggactaacttagagaaaagagaaaatatgacttcaaagatgaaaaattgcttctttttttgtgtgta |
4358276 |
T |
|
| Q |
406 |
gaatttgcaggtagcagtcaacttgcacctacctgcatagttttccttaaatctatagcaattataaataggacctttgattctatgcatatagaaaagt |
505 |
Q |
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|||||||||| | ||||| ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| ||||||||||||||||| |
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| T |
4358275 |
gaatttgcagatggcagtaaacttgcacctacctgcatagttttccttaaatctatagcaattatatataggacctttgattttatgcatatagaaaagt |
4358176 |
T |
|
| Q |
506 |
agatgttttacgtcactcaaacatacgatattcaaagaaaaaacagtaccctgcattttatcatataaagttgt |
579 |
Q |
| |
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||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| ||||||||||| |
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| T |
4358175 |
agatgttttacgtcactcagacatacgatattcaaagaaaaaacagtaccctgcattttatcttataaagttgt |
4358102 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 62; E-Value: 2e-26
Query Start/End: Original strand, 50 - 131
Target Start/End: Complemental strand, 4358724 - 4358643
Alignment:
| Q |
50 |
aattcattaacaacaaaataatttttagattgtgaactgtgcataacctaaaaacgacaatcaatctgagacgaagggagtg |
131 |
Q |
| |
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|||||||||||||||||| || |||||||||||||| ||||||||||||| |||||||||||||||||||||||||||||| |
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| T |
4358724 |
aattcattaacaacaaaagaaattttagattgtgaatcgtgcataacctaagaacgacaatcaatctgagacgaagggagtg |
4358643 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 97; Significance: 2e-47; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 97; E-Value: 2e-47
Query Start/End: Original strand, 56 - 241
Target Start/End: Complemental strand, 45033344 - 45033154
Alignment:
| Q |
56 |
ttaacaacaaaataatttttagattgtgaactgtgcataacctaaaaacgacaatcaatctgagacgaagggagtg-ttcaaatgcttgagaatttactt |
154 |
Q |
| |
|
|||||||||||| || ||||||||||| ||| || || |||||||||| |||||||||||||| ||||||| |||| ||||||||||||||||||||||| |
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| T |
45033344 |
ttaacaacaaaagaaattttagattgtaaaccgtacagaacctaaaaatgacaatcaatctgaaacgaaggaagtgcttcaaatgcttgagaatttactt |
45033245 |
T |
|
| Q |
155 |
atacc---ctc-aatttactttttcaatcaaaatgaaattacaaattgaaatatattcagcttacatttgaaccatttatatatcatttta |
241 |
Q |
| |
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||||| || ||||||||||||||||||||||||||||||||| |||| ||||| |||||||||||||||||| ||||||||| |||| |
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| T |
45033244 |
ataccaaaatcgaatttactttttcaatcaaaatgaaattacaaacagaaacatatttagcttacatttgaaccatgtatatatcaattta |
45033154 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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