View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11890_low_7 (Length: 435)
Name: NF11890_low_7
Description: NF11890
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11890_low_7 |
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| [»] scaffold1808 (1 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 185; Significance: 1e-100; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 185; E-Value: 1e-100
Query Start/End: Original strand, 144 - 429
Target Start/End: Original strand, 40692570 - 40692859
Alignment:
| Q |
144 |
ttcttctactcttttttctaaaccatatannnnnnnaaagcggcgtgtccggattcgaaccccagcctctgcatataacaatatgtatgtctctgcaact |
243 |
Q |
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| T |
40692570 |
ttcttctactctttttcctaaaccgtatattttttttaagcggcgtgtccgggttcgaacctcagcctctgcatataacaatatgtatgtctctgcaact |
40692669 |
T |
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| Q |
244 |
gagttatgctcacggagacttcatcaatcatatttaacctcttgttttatttaaaaataatacatacatgcatatttcttggttcacagtatcatatata |
343 |
Q |
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| T |
40692670 |
gagttatgttcacggagatttcatcaaccatatttaacctcttgttttatttaaaaataatacatacatgcatatttcttggttcacagtatcatatata |
40692769 |
T |
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| Q |
344 |
tcattttcaaattttgatttcatt----nnnnnnnnnctctttgtagtgtcattatagagagcttgcttgtgtagctactgccatacttg |
429 |
Q |
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| T |
40692770 |
tctttttcaaattttgatctcattaaaaaaaaaaaacctctttgtagtgtcattatagagagcttgcttgtgtagctactgccatacttg |
40692859 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 19 - 121
Target Start/End: Original strand, 40692447 - 40692544
Alignment:
| Q |
19 |
tgacatgaaacaatgtctttaaacgaatataatcaaggaatactgttattctagtgacaccatactatactagtagtatagataatgctagagacttact |
118 |
Q |
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| T |
40692447 |
tgacatgaaacaatgtctttaaacgaatataatcaaagaatactgttattctagtgacatcatactatactag-----tagataatgctagagacttact |
40692541 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 194 - 263
Target Start/End: Complemental strand, 10442946 - 10442878
Alignment:
| Q |
194 |
ggattcgaaccccagcctctgcatataacaatatgtatgtctctgcaactgagttatgctcacggagact |
263 |
Q |
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| T |
10442946 |
ggattcgaaccccaacccctacatataacaatgtatatctctat-caactgagttatgctcacggtgact |
10442878 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold1808 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: scaffold1808
Description:
Target: scaffold1808; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 208 - 258
Target Start/End: Original strand, 881 - 930
Alignment:
| Q |
208 |
gcctctgcatataacaatatgtatgtctctg-caactgagttatgctcacgg |
258 |
Q |
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| T |
881 |
gcctctgcatataacaat--gtatgtccctgacaactgagttatgctcacgg |
930 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 197 - 263
Target Start/End: Original strand, 3461761 - 3461826
Alignment:
| Q |
197 |
ttcgaaccccagcctctgcatataacaatatgtatgtctctg-caactgagttatgctcacggagact |
263 |
Q |
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| T |
3461761 |
ttcgaaccccaacccctacatataacaat--gcatgtccctgtcaactgagttatgctcacggagact |
3461826 |
T |
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