View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11890_low_8 (Length: 425)
Name: NF11890_low_8
Description: NF11890
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11890_low_8 |
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Alignment Details
Target: chr5 (Bit Score: 368; Significance: 0; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 368; E-Value: 0
Query Start/End: Original strand, 19 - 406
Target Start/End: Complemental strand, 4371061 - 4370674
Alignment:
| Q |
19 |
cacagaatatggagatttcttccttgattggtactcaagcaaacttgttgaacatggtgagaaaattcttgtatcagctaaaagcatattccaaacaagt |
118 |
Q |
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| T |
4371061 |
cacagaatatggagatttcttccttgattggtactcaagcaagcttgttgaacatggtgagaaaattcttgtatcagctaaaagcatattccaaacaagt |
4370962 |
T |
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| Q |
119 |
ggagtgaaactatctgccaaaatagctggaattcattggcattacaatgcaagatcacatgcaactgaattaactgcaggttactataacacaaggtttc |
218 |
Q |
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| T |
4370961 |
ggagtgaaactatctgccaaaatagctggaattcattggcattacaatgcaagatcacatgcaactgaattaactgcaggttactataacacaaggtttc |
4370862 |
T |
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| Q |
219 |
atgatggttatataccaatagcacaaatgcttgcaaaacatggagttatactaaatttcacatgcatggaaatgaaggataatgaacaacctggccatgc |
318 |
Q |
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||||||||||||||||||||||||||||||| |||||||||||||||||| | ||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4370861 |
atgatggttatataccaatagcacaaatgctagcaaaacatggagttatattgaatttcacatgcatggaaatgaaggataatgaacaacctggccatgc |
4370762 |
T |
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| Q |
319 |
taattgttcaccagaaggattggtgaatcaagtgaagatggcaacaaagattgcaggtggtgaacttgctggtgagaatgctttggag |
406 |
Q |
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| T |
4370761 |
taattgttcaccagaaggattggtgaatcaagtgaagatggcaacaaagattgcaggtggtgaacttgctggtgagaatgcattggag |
4370674 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 340; E-Value: 0
Query Start/End: Original strand, 19 - 406
Target Start/End: Complemental strand, 4363258 - 4362871
Alignment:
| Q |
19 |
cacagaatatggagatttcttccttgattggtactcaagcaaacttgttgaacatggtgagaaaattcttgtatcagctaaaagcatattccaaacaagt |
118 |
Q |
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| T |
4363258 |
cacagaatatggagatttcttccttgattggtactcaagcaagcttgttgaacatggtgagaaaattcttgtatcagctaaaagcatattccaaacaagt |
4363159 |
T |
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| Q |
119 |
ggagtgaaactatctgccaaaatagctggaattcattggcattacaatgcaagatcacatgcaactgaattaactgcaggttactataacacaaggtttc |
218 |
Q |
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| T |
4363158 |
ggagtgaaactatctgccaaaatagctggaattcattggcattacaatgcaagatcacatgcaactgaattaactgcaggttactataacacaaagtttc |
4363059 |
T |
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| Q |
219 |
atgatggttatataccaatagcacaaatgcttgcaaaacatggagttatactaaatttcacatgcatggaaatgaaggataatgaacaacctggccatgc |
318 |
Q |
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||||||||||||||||||||||||||||||| |||||||||||||||||| | ||||||||||||||||||||||||||||||||||||||| | |||| |
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| T |
4363058 |
atgatggttatataccaatagcacaaatgctagcaaaacatggagttatattgaatttcacatgcatggaaatgaaggataatgaacaaccttgtgatgc |
4362959 |
T |
|
| Q |
319 |
taattgttcaccagaaggattggtgaatcaagtgaagatggcaacaaagattgcaggtggtgaacttgctggtgagaatgctttggag |
406 |
Q |
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| T |
4362958 |
aaattgttcaccagaaggattggtaaatcaagtgagaatggcaacaaagattgcaggtggtgaacttgctggtgagaatgctttggag |
4362871 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 53; Significance: 3e-21; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 86 - 366
Target Start/End: Original strand, 41043862 - 41044142
Alignment:
| Q |
86 |
cttgtatcagctaaaagcatattccaaacaagtggagtgaaactatctgccaaaatagctggaattcattggcattacaatgcaagatcacatgcaactg |
185 |
Q |
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||||||||||| ||| |||||||| ||| ||| ||||||||||||| ||| | || ||||| ||||||||||||| |||| || || ||| ||| |
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| T |
41043862 |
cttgtatcagccaaagaaatattccagacatctggtgtgaaactatctggtaaagttgcgggaatccattggcattacagatcaaggtcgcacgcagctg |
41043961 |
T |
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| Q |
186 |
aattaactgcaggttactataacacaaggtttcatgatggttatataccaatagcacaaatgcttgcaaaacatggagttatactaaatttcacatgcat |
285 |
Q |
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| T |
41043962 |
aactaactgctggttactataacactagacataatgatgggtatcttccaattgccaaaatgtttgcaaaccatgacgttgtcttcaatttcacctgcat |
41044061 |
T |
|
| Q |
286 |
ggaaatgaaggataatgaacaacctggccatgctaattgttcaccagaaggattggtgaatcaagtgaagatggcaacaaa |
366 |
Q |
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||||||||| || | ||||||||||| |||||||| ||||| |||||||| || || | ||||| |||| ||||||||| |
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| T |
41044062 |
ggaaatgaaagacagagaacaacctggacatgctaactgttcgccagaagggttagttcaccaagtcaagaaggcaacaaa |
41044142 |
T |
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