View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF11891_high_12 (Length: 382)
Name: NF11891_high_12
Description: NF11891
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11891_high_12 |
 | |
|
Alignment Details
Target: chr7 (Bit Score: 337; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 337; E-Value: 0
Query Start/End: Original strand, 17 - 373
Target Start/End: Original strand, 38839899 - 38840255
Alignment:
| Q |
17 |
agatagcttgtaagctaatcaattaattcttcttgtgcacatctagagccacctgcaccatcatcttgcacctgaccaagaagttcttccaataacttgt |
116 |
Q |
| |
|
|||||||||| ||||||||||||||||||||||| ||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
38839899 |
agatagcttgcaagctaatcaattaattcttcttaagcaaatctagagccacctgcaccatcatcttgcacctgaccaagaagttcttccaataacttgt |
38839998 |
T |
|
| Q |
117 |
tgtccaagcattccaattgatcaaaagtatcatcaccttgttgttgatatgaatttgaggttgaagtagtgtttggaatataattaatactagaatgaga |
216 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
38839999 |
tgtccaagcattccaattgatcaaaagtatcatcaccttgttgttgatatgaatttgaggttgaagtagtgtttggaatataattaatactagaatgaga |
38840098 |
T |
|
| Q |
217 |
aaaatcatttgggaaattgagaatggctttgtgaccacgaaaatgaaaagcagcagcatcataagcacgtgcagcttgttctgcagtttcaaatgttcca |
316 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |
|
|
| T |
38840099 |
aaaatcatttgggaaattgagaatggctttgtgaccacgaaaatgaaaagcagcagcatcataagcacgtgcagcttgttctgctgtttcaaatgttcca |
38840198 |
T |
|
| Q |
317 |
agccaaatacgagagccttttctagttgggtcacgaatttctgctgcaaacttaccc |
373 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
38840199 |
agccaaatacgagagccttttctagttgggtcacgaatttctgctgcaaacttaccc |
38840255 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 82; Significance: 1e-38; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 82; E-Value: 1e-38
Query Start/End: Original strand, 221 - 366
Target Start/End: Complemental strand, 30641893 - 30641748
Alignment:
| Q |
221 |
tcatttgggaaattgagaatggctttgtgaccacgaaaatgaaaagcagcagcatcataagcacgtgcagcttgttctgcagtttcaaatgttccaagcc |
320 |
Q |
| |
|
||||| |||||||||||||| ||| | ||||||||||||||||||||||||||||||||||| | |||||||||||| ||||| |||||||||||||||| |
|
|
| T |
30641893 |
tcattagggaaattgagaatagctctatgaccacgaaaatgaaaagcagcagcatcataagctcttgcagcttgttcagcagtatcaaatgttccaagcc |
30641794 |
T |
|
| Q |
321 |
aaatacgagagccttttctagttgggtcacgaatttctgctgcaaa |
366 |
Q |
| |
|
| || | | ||||| || |||||||||||||||||||||||||| |
|
|
| T |
30641793 |
atattcttgtccctttccttgttgggtcacgaatttctgctgcaaa |
30641748 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University