View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11891_high_15 (Length: 355)
Name: NF11891_high_15
Description: NF11891
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11891_high_15 |
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Alignment Details
Target: chr8 (Bit Score: 322; Significance: 0; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 322; E-Value: 0
Query Start/End: Original strand, 1 - 337
Target Start/End: Complemental strand, 43142308 - 43141971
Alignment:
| Q |
1 |
ccaaaccttttcaggggaatgtgtcctatatgactactgttactcttggaagattggcctgataggagtgctcaagctcatttatgtcatgacaaaggaa |
100 |
Q |
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| T |
43142308 |
ccaaaccttttcaggggaatgtgtcctatatgactactgttactcttggaagattggcctgataggagtgctcaagctcatttatgtcatgacaaaggaa |
43142209 |
T |
|
| Q |
101 |
agaaaggctattgccattcttcatagcatccttcatttgtttgatcgctctgttcctgtaagggggaagatgcagtctttctcataggcgcatgacaacg |
200 |
Q |
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| T |
43142208 |
agaaaggctattgccattcttcatagcatctttcatttgtttgatcgctctgttcctgtaagggggaagatgcagtctttctcataggcgcatgacaacg |
43142109 |
T |
|
| Q |
201 |
gaagcgtttccagattctatgacattcattattaagtaatgagtacctaaaat-agaagcaaaagcatacccaagagcaagtgttaagcaaataaaatat |
299 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| ||||||||||||||||||||||||||||||||||||| |
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| T |
43142108 |
gaagcgtttccagattctatgacattcattattaagtaatgagtacctaaaataagaagcaagagcatacccaagagcaagtgttaagcaaataaaatat |
43142009 |
T |
|
| Q |
300 |
ccctgcagagcaaacaaaatattcagatttatgattat |
337 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||| |
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| T |
43142008 |
ccctgcagagcaaacaaaatattcagatttatgattat |
43141971 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 132; E-Value: 2e-68
Query Start/End: Original strand, 30 - 338
Target Start/End: Complemental strand, 43153875 - 43153568
Alignment:
| Q |
30 |
atgactactgttactcttggaagattggcctgataggagtgctcaagctcatttatgtcatgacaaaggaaagaaaggctattgccattcttcatagcat |
129 |
Q |
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|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| ||||||||||| ||||||||||||| |||||| | |
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| T |
43153875 |
atgactactgttactcttggaagattggcctgatagaagtgctcaagctcatttatgtcatgacataggaaagaaagactattgccattctgcatagctt |
43153776 |
T |
|
| Q |
130 |
ccttcatttgtttgatcgctctgttcctgtaagggggaagatgcagtctttctcataggcgcatgacaacggaagcgtttccagattctatgac-attca |
228 |
Q |
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| T |
43153775 |
ccttcatttgttttatctctctgttcctgtaa-gggaaaaattcagtatttctcatagggg--tgacaatgaaagtgtttctggattctgacactattga |
43153679 |
T |
|
| Q |
229 |
ttattaagtaatgagtacctaaaat-agaagcaaaagcatacccaagagcaagtgttaagcaaataaaatatccctgcagagcaaacaaaatattcagat |
327 |
Q |
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|| | | |||||||||||||| || |||||||| ||| ||||||||||||||||||||||||| ||| ||||||||| || ||||| || |||||||| |
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| T |
43153678 |
gtaatgactaatgagtacctaacataagaagcaagagcccacccaagagcaagtgttaagcaaatgaaacatccctgcaaagtaaacataacattcagat |
43153579 |
T |
|
| Q |
328 |
ttatgattatt |
338 |
Q |
| |
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|||| |||||| |
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| T |
43153578 |
ttattattatt |
43153568 |
T |
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