View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11891_high_18 (Length: 298)
Name: NF11891_high_18
Description: NF11891
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11891_high_18 |
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Alignment Details
Target: chr2 (Bit Score: 160; Significance: 3e-85; HSPs: 4)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 160; E-Value: 3e-85
Query Start/End: Original strand, 79 - 238
Target Start/End: Complemental strand, 9163536 - 9163377
Alignment:
| Q |
79 |
acaaataacttaatttttagactgttttcctagtgccgttgttgaaatttttcattattttattggatcaggcaccaaaatcatctggaaaagatgtaaa |
178 |
Q |
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| T |
9163536 |
acaaataacttaatttttagactgttttcctagtgccgttgttgaaatttttcattattttattggatcaggcaccaaaatcatctggaaaagatgtaaa |
9163437 |
T |
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| Q |
179 |
tggatctacgtccaaaagtaatggacctccaagaggtacaccaccccagtcatcaaacgc |
238 |
Q |
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| T |
9163436 |
tggatctacgtccaaaagtaatggacctccaagaggtacaccaccccagtcatcaaacgc |
9163377 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 128; E-Value: 3e-66
Query Start/End: Original strand, 81 - 284
Target Start/End: Complemental strand, 9150898 - 9150695
Alignment:
| Q |
81 |
aaataacttaatttttagactgttttcctagtgccgttgttgaaatttttcattattttattggatcaggcaccaaaatcatctggaaaagatgtaaatg |
180 |
Q |
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| T |
9150898 |
aaataacttaatttttagagcgttttcctattgctgttgttaaaattcttcattattttattgaatcaggaaccaaaatcttctgcaaaagatgtcaatg |
9150799 |
T |
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| Q |
181 |
gatctacgtccaaaagtaatggacctccaagaggtacaccaccccagtcatcaaacgctgggtcttctaacacagcttctggacctgtaactgaggaaga |
280 |
Q |
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| T |
9150798 |
gatcttcgtccaaaagtaatgcacctccaagaggtacaccaccaccgtcatcaaactctgggtcttctaatgcagcttctggacctgtaaccgaggaaga |
9150699 |
T |
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| Q |
281 |
aatt |
284 |
Q |
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|||| |
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| T |
9150698 |
aatt |
9150695 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 253 - 284
Target Start/End: Complemental strand, 9163377 - 9163346
Alignment:
| Q |
253 |
cagcttctggacctgtaactgaggaagaaatt |
284 |
Q |
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| T |
9163377 |
cagcttctggacctgtaactgaggaagaaatt |
9163346 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 34 - 64
Target Start/End: Complemental strand, 9163587 - 9163557
Alignment:
| Q |
34 |
ttatcattcaacatattttaaacaaaacttg |
64 |
Q |
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| T |
9163587 |
ttatcattcaacatattttaaacaaaacttg |
9163557 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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