View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF11891_high_24 (Length: 241)

Name: NF11891_high_24
Description: NF11891
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF11891_high_24
NF11891_high_24
[»] chr8 (5 HSPs)
chr8 (128-231)||(38310319-38310422)
chr8 (1-65)||(38310192-38310256)
chr8 (175-215)||(38301721-38301761)
chr8 (6-50)||(38307431-38307475)
chr8 (6-47)||(38314818-38314859)


Alignment Details
Target: chr8 (Bit Score: 104; Significance: 6e-52; HSPs: 5)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 104; E-Value: 6e-52
Query Start/End: Original strand, 128 - 231
Target Start/End: Original strand, 38310319 - 38310422
Alignment:
Q  128 ctaatgttcaatgttggatgaaactagtatgtaaatctacttgaatgggaacatatttcaggtattgttcttgcaccttatttcacttggtttctctctc 227  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  38310319 ctaatgttcaatgttggatgaaactagtatgtaaatctacttgaatgggaacatatttcaggtattgttcttgcaccttatttcacttggtttctctctc 38310418  T
Q  228 tctg 231  Q
    ||||    
T  38310419 tctg 38310422  T

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Target: chr8; HSP #2
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 1 - 65
Target Start/End: Original strand, 38310192 - 38310256
Alignment:
Q  1 tttgcaaaattaaaactatatatggttgttaggctatgttttttggacttactggcggacttaga 65  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  38310192 tttgcaaaattaaaactatatatggttgttaggctatgttttttggacttactggcggacttaga 38310256  T

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Target: chr8; HSP #3
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 175 - 215
Target Start/End: Original strand, 38301721 - 38301761
Alignment:
Q  175 ggaacatatttcaggtattgttcttgcaccttatttcactt 215  Q
    |||||| ||||| ||||||||||||||||||||||||||||    
T  38301721 ggaacaaatttcgggtattgttcttgcaccttatttcactt 38301761  T

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Target: chr8; HSP #4
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 6 - 50
Target Start/End: Original strand, 38307431 - 38307475
Alignment:
Q  6 aaaattaaaactatatatggttgttaggctatgttttttggactt 50  Q
    ||||||||||||||||| |||||||||| |||||||||| |||||    
T  38307431 aaaattaaaactatatacggttgttaggttatgttttttagactt 38307475  T

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Target: chr8; HSP #5
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 6 - 47
Target Start/End: Original strand, 38314818 - 38314859
Alignment:
Q  6 aaaattaaaactatatatggttgttaggctatgttttttgga 47  Q
    |||||||| ||||||||||||||||||| |||||||| ||||    
T  38314818 aaaattaagactatatatggttgttaggttatgttttctgga 38314859  T

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